Aliases for ENSG00000259177 Gene

Subcategory (RNA class) for ENSG00000259177 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000259177 Gene

  • Novel Transcript, Antisense To IQGAP1 5
  • NONHSAG017873.2 91
  • HSALNG0108134 164
  • HSALNG0108131 164
  • AC018946.1 5
  • Lnc-CIB1-2 165

External Ids for ENSG00000259177 Gene

Previous GeneCards Identifiers for ENSG00000259177 Gene

  • GC15M090936
  • GC15M090393

Summaries for ENSG00000259177 Gene

GeneCards Summary for ENSG00000259177 Gene

ENSG00000259177 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000259177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000259177 Gene

Genomics for ENSG00000259177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259177 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J090395 Enhancer 0.4 dbSUPER 600.7 +1.6 1645 1.5 PRDM1 ZNF707 ZBTB33 NR3C1 ENSG00000259177 IQGAP1 ZNF774 ENSG00000259212 GABARAPL3 CRTC3 VPS33B
GH15J090397 Promoter 0.3 Ensembl 600.7 +0.2 180 0.2 ENSG00000259177 FJ601684-136 ZNF774 GABARAPL3 CRTC3 IQGAP1
GH15J090387 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.1 9080 3.2 HNRNPL CREB1 POLR2A BACH1 ZHX2 LARP7 GABPA PHF21A RBFOX2 PATZ1 IQGAP1 lnc-CIB1-5 ZNF774 ENSG00000259177 CRTC3
GH15J090392 Enhancer 0.7 ENCODE dbSUPER 0.7 +4.3 4323 2.9 KDM1A CEBPB ZNF316 MAFG POLR2A ZNF664 MAFF NANOG EMSY IQGAP1 ZNF774 GABARAPL3 NGRN ENSG00000259177 CRTC3
GH15J090376 Enhancer 0.6 ENCODE dbSUPER 0.4 +20.7 20693 1.2 GABPA RUNX3 SPI1 POLR2A GABPB1 ELF1 IQGAP1 ZNF774 GABARAPL3 CIB1 NDUFA3P4 ENSG00000259177
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259177 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259177 Gene

Genomic Locations for ENSG00000259177 Gene
chr15:90,368,820-90,397,881
(GRCh38/hg38)
Size:
29,062 bases
Orientation:
Minus strand
chr15:90,936,722-90,941,113
(GRCh37/hg19)
Size:
4,392 bases
Orientation:
Minus strand

Genomic View for ENSG00000259177 Gene

Genes around ENSG00000259177 on UCSC Golden Path with GeneCards custom track
ENSG00000259177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259177 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259177 Gene

Proteins for ENSG00000259177 Gene

Post-translational modifications for ENSG00000259177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259177 Gene

Domains & Families for ENSG00000259177 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259177 Gene

Function for ENSG00000259177 Gene

Phenotypes From GWAS Catalog for ENSG00000259177 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259177 Gene

Localization for ENSG00000259177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259177 Gene

Pathways & Interactions for ENSG00000259177 Gene

PathCards logo

SuperPathways for ENSG00000259177 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259177 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259177 Gene

Drugs & Compounds for ENSG00000259177 Gene

No Compound Related Data Available

Transcripts for ENSG00000259177 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259177 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001DA6BD_9606 lncRNA 458 4

Ensembl: ENST00000560578 (view in UCSC) ,

LncBook: HSALNT0224509,

LNCipedia: lnc-CIB1-2:2,

NONCODE: NONHSAT048393.2,

URS00009C0677_9606 lncRNA 561 2

LncBook: HSALNT0224506,

NONCODE: NONHSAT171916.1,

URS00009BFE1F_9606 lncRNA 12174 1

NONCODE: NONHSAT171915.1,

URS00008B5FD3_9606 lncRNA 12173 1

LNCipedia: lnc-CIB1-2:3,

ENSG00000259177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259177 Gene

No ASD Table

Relevant External Links for ENSG00000259177 Gene

GeneLoc Exon Structure for
ENSG00000259177

No data available for mRNA/cDNA for ENSG00000259177 Gene

Expression for ENSG00000259177 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259177 Gene

genes like me logo Genes that share expression patterns with ENSG00000259177: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259177 Gene

Orthologs for ENSG00000259177 Gene

Evolution for ENSG00000259177 Gene

ENSEMBL:
Gene Tree for ENSG00000259177 (if available)
TreeFam:
Gene Tree for ENSG00000259177 (if available)

No data available for Orthologs for ENSG00000259177 Gene

Paralogs for ENSG00000259177 Gene

No data available for Paralogs for ENSG00000259177 Gene

Variants for ENSG00000259177 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259177 Gene

Disorders for ENSG00000259177 Gene

Additional Disease Information for ENSG00000259177

No disorders were found for ENSG00000259177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000259177 Gene

Publications for ENSG00000259177 Gene

No publications were found for ENSG00000259177 Gene.

No data available for Mastermind for ENSG00000259177 Gene

Products for ENSG00000259177 Gene

Sources for ENSG00000259177 Gene