Aliases for ENSG00000259084 Gene

Data sources for ENSG00000259084 Gene:

Subcategory (RNA class) for ENSG00000259084 Gene

lncRNA

Aliases for ENSG00000259084 Gene

External Ids for ENSG00000259084 Gene

Previous GeneCards Identifiers for ENSG00000259084 Gene

  • GC14P096129

Summaries for ENSG00000259084 Gene

GeneCards Summary for ENSG00000259084 Gene

ENSG00000259084 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000259084 Gene

  • T-cell leukemia/lymphoma 6 conserved region 3
  • T-cell leukemia/lymphoma 6 conserved region 2
  • T-cell leukemia/lymphoma 6 conserved region 1

Additional gene information for ENSG00000259084 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000259084 Gene

Genomics for ENSG00000259084 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000259084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J095659 Enhancer 1.2 FANTOM5 Ensembl ENCODE 250.7 -0.1 -115 7.5 SP1 BCL11A ZIC2 CTCF IRF4 ZNF341 EBF1 SMARCA5 CBFB USF2 ENSG00000275033 ENSG00000259084 TCL1A TCL6 ENSG00000258927 TCL1B GLRX5
GH14J095667 Enhancer 0.7 ENCODE CraniofacialAtlas 0.7 +4.1 4148 0.7 ZIC2 EBF1 BHLHE40 GLIS1 TCF12 USF1 ZNF423 MAZ EP300 TCL1A TCL6 ENSG00000277468 ENSG00000259084 TCL1B GLRX5
GH14J095686 Promoter/Enhancer 0.8 EPDnew Ensembl 0.3 +23.1 23145 2.4 SIX4 VEZF1 NRF1 L3MBTL2 ZFP3 OSR2 MNT TCL1B TCL1A lnc-TCL1B-4 ENSG00000259084 GLRX5
GH14J095678 Enhancer 0.8 Ensembl ENCODE 0.4 +17.1 17106 3.3 CTCF ZIC2 SMC3 TEAD3 BHLHE40 GLIS1 NFIB RAD21 PKNOX1 TRIM22 lnc-TCL1B-4 TCL1B ENSG00000277468 ENSG00000259084 TCL6 GLRX5
GH14J095670 Promoter/Enhancer 0.5 EPDnew Ensembl 0.4 +7.3 7344 0.4 TCL1B ENSG00000277468 TCL1A ENSG00000259084 lnc-TCL1B-4 TCL6 GLRX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000259084 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000259084 Gene

Latest Assembly
chr14:95,663,256-95,692,630
(GRCh38/hg38)
Size:
29,375 bases
Orientation:
Plus strand

Previous Assembly
chr14:96,129,593-96,158,967
(GRCh37/hg19 by Ensembl)
Size:
29,375 bases
Orientation:
Plus strand

Genomic View for ENSG00000259084 Gene

Genes around ENSG00000259084 on UCSC Golden Path with GeneCards custom track
ENSG00000259084 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000259084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000259084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000259084 Gene

Proteins for ENSG00000259084 Gene

Post-translational modifications for ENSG00000259084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000259084 Gene

Domains & Families for ENSG00000259084 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000259084 Gene

Function for ENSG00000259084 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000259084 Gene

Localization for ENSG00000259084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000259084 Gene

Pathways & Interactions for ENSG00000259084 Gene

PathCards logo

SuperPathways for ENSG00000259084 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000259084 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000259084 Gene

Drugs & Compounds for ENSG00000259084 Gene

No Compound Related Data Available

Transcripts for ENSG00000259084 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000259084 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000019AA5D_9606 lncRNA 3217 3

Ensembl: ENST00000553913 (view in UCSC) ,

LncBook: HSALNT0215250,

NONCODE: NONHSAT039478.2,

URS0000182E21_9606 lncRNA 3119 3

Ensembl: ENST00000488933 (view in UCSC) ,

LncBook: HSALNT0215249,

NONCODE: NONHSAT039480.2,

URS00001A2CD9_9606 lncRNA 3574 2

Ensembl: ENST00000461160 (view in UCSC) ,

NONCODE: NONHSAT039476.2,

URS0000170388_9606 lncRNA 3507 2

Ensembl: ENST00000495847 (view in UCSC) ,

NONCODE: NONHSAT039482.2,

URS00008B2F43_9606 lncRNA 2078 3

LncBook: HSALNT0215255,

LNCipedia: TCL6:23,

NONCODE: NONHSAT039485.2,

ENSG00000259084 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000259084 Gene

No ASD Table

Relevant External Links for ENSG00000259084 Gene

GeneLoc Exon Structure for
ENSG00000259084

No data available for mRNA/cDNA for ENSG00000259084 Gene

Expression for ENSG00000259084 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000259084 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000259084 Gene

This gene is overexpressed in Testis (x20.4), Whole Blood (x9.6), and Spleen (x7.8).
genes like me logo Genes that share expression patterns with ENSG00000259084: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000259084 Gene

Orthologs for ENSG00000259084 Gene

Evolution for ENSG00000259084 Gene

ENSEMBL:
Gene Tree for ENSG00000259084 (if available)
TreeFam:
Gene Tree for ENSG00000259084 (if available)

No data available for Orthologs for ENSG00000259084 Gene

Paralogs for ENSG00000259084 Gene

No data available for Paralogs for ENSG00000259084 Gene

Variants for ENSG00000259084 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000259084 Gene

Disorders for ENSG00000259084 Gene

No disorders were found for ENSG00000259084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000259084 Gene

Publications for ENSG00000259084 Gene

No publications were found for ENSG00000259084 Gene.

No data available for Mastermind for ENSG00000259084 Gene

Products for ENSG00000259084 Gene

Sources for ENSG00000259084 Gene