Aliases for ENSG00000258904 Gene

Subcategory (RNA class) for ENSG00000258904 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000258904 Gene

  • Novel Transcript, Intronic To YY1 5
  • NONHSAG015895.2 91
  • Lnc-SLC25A47-3 165
  • AL157871.5 5

External Ids for ENSG00000258904 Gene

Previous GeneCards Identifiers for ENSG00000258904 Gene

  • GC14P101038
  • GC14P101066
  • GC14P101104
  • GC14P101149
  • GC14P101194
  • GC14P100264
  • GC14P100272
  • GC14P100273
  • GC14P100274
  • GC14P100275
  • GC14P100265
  • GC14P100267
  • GC14P100268
  • GC14P100269
  • GC14P100270
  • GC14P100271

Summaries for ENSG00000258904 Gene

GeneCards Summary for ENSG00000258904 Gene

ENSG00000258904 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258904 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258904 Gene

Genomics for ENSG00000258904 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258904 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J100263 Enhancer 0.5 ENCODE dbSUPER 600.7 -0.3 -331 0.8 ZNF121 ZNF560 ENSG00000258904 lnc-DEGS2-3 YY1 SLC25A29
GH14J100271 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +9.0 9020 6.4 CTCF FOXA1 SP1 SCRT2 SOX13 CTBP1 FOXA2 ZNF217 JUND CUX1 YY1 WARS1 WDR25 DEGS2 MIR342 SLC25A29 MIR6764 ENSG00000258904
GH14J100268 Enhancer 0.6 Ensembl dbSUPER 0.7 +4.6 4620 0.8 SP1 ZNF600 CEBPB PRDM4 HNF4A HNF4G YY1 WARS1 WDR25 DEGS2 MIR342 SLC25A29 ENSG00000258904 MIR6764
GH14J100255 Enhancer 0.8 ENCODE dbSUPER 0.4 -7.2 -7215 1.3 IKZF2 SCRT2 ARID3A DPF2 RELB RUNX3 CBFB RBM22 SCRT1 ARNT SLC25A29 ENSG00000258904 lnc-DEGS2-3 YY1
GH14J100269 Enhancer 0.6 Ensembl dbSUPER 0.4 +5.3 5320 0.2 SP1 ZNF600 RBM22 HNF4A HNF4G YY1 WARS1 WDR25 DEGS2 MIR342 ENSG00000258904 MIR6764 SLC25A29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258904 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258904 Gene

Genomic Locations for ENSG00000258904 Gene
chr14:100,263,781-100,265,405
(GRCh38/hg38)
Size:
1,625 bases
Orientation:
Plus strand
chr14:100,730,118-100,731,742
(GRCh37/hg19)
Size:
1,625 bases
Orientation:
Plus strand

Genomic View for ENSG00000258904 Gene

Genes around ENSG00000258904 on UCSC Golden Path with GeneCards custom track
ENSG00000258904 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258904 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258904 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258904 Gene

Proteins for ENSG00000258904 Gene

Post-translational modifications for ENSG00000258904 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258904 Gene

Domains & Families for ENSG00000258904 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258904 Gene

Function for ENSG00000258904 Gene

Phenotypes From GWAS Catalog for ENSG00000258904 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258904 Gene

Localization for ENSG00000258904 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258904 Gene

Pathways & Interactions for ENSG00000258904 Gene

PathCards logo

SuperPathways for ENSG00000258904 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258904 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258904 Gene

Drugs & Compounds for ENSG00000258904 Gene

No Compound Related Data Available

Transcripts for ENSG00000258904 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258904 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000021C2E3_9606 lncRNA 533 3

Ensembl: ENST00000555212 (view in UCSC) ,

LNCipedia: lnc-SLC25A47-3:1,

NONCODE: NONHSAT039671.2,

ENSG00000258904 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258904 Gene

No ASD Table

Relevant External Links for ENSG00000258904 Gene

GeneLoc Exon Structure for
ENSG00000258904

No data available for mRNA/cDNA for ENSG00000258904 Gene

Expression for ENSG00000258904 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258904 Gene

genes like me logo Genes that share expression patterns with ENSG00000258904: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258904 Gene

Orthologs for ENSG00000258904 Gene

Evolution for ENSG00000258904 Gene

ENSEMBL:
Gene Tree for ENSG00000258904 (if available)
TreeFam:
Gene Tree for ENSG00000258904 (if available)

No data available for Orthologs for ENSG00000258904 Gene

Paralogs for ENSG00000258904 Gene

No data available for Paralogs for ENSG00000258904 Gene

Variants for ENSG00000258904 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258904 Gene

Disorders for ENSG00000258904 Gene

Additional Disease Information for ENSG00000258904

No disorders were found for ENSG00000258904 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000258904 Gene

Publications for ENSG00000258904 Gene

No publications were found for ENSG00000258904 Gene.

No data available for Mastermind for ENSG00000258904 Gene

Products for ENSG00000258904 Gene

Sources for ENSG00000258904 Gene