Aliases for ENSG00000258789 Gene

Subcategory (RNA class) for ENSG00000258789 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000258789 Gene

  • Novel Transcript, Antisense To PTPN21 5
  • NONHSAG015658 92
  • HSALNG0103036 167
  • Lnc-ZC3H14-1 168
  • AL162171.1 5

External Ids for ENSG00000258789 Gene

Previous GeneCards Identifiers for ENSG00000258789 Gene

  • GC14P089017

Summaries for ENSG00000258789 Gene

GeneCards Summary for ENSG00000258789 Gene

ENSG00000258789 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258789 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258789 Gene

Genomics for ENSG00000258789 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000258789 Gene

Promoters and enhancers for ENSG00000258789 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J088550 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +1.5 1470 5.2 EP300 MYC TCF12 POLR2G USF1 PHF8 JUND TEAD4 ZFX CTCF PTPN21 ENSG00000258789 SPATA7 ENSG00000258983 EML5
GH14J088542 Enhancer 0.6 Ensembl ENCODE 0.4 -9.3 -9261 3.1 JUND GATA3 FOXA1 FOS SMARCA4 ESR1 ENSG00000258983 ZC3H14 SPATA7 PTPN21 ENSG00000258789 piR-56341-057
GH14J088534 Enhancer 0.8 Ensembl ENCODE 0.4 -16.1 -16096 1.4 TBX3 RAD21 SPI1 CTCF BCL6 THRB NFIL3 TEAD3 ARID4B HLF ZC3H14 SPATA7 piR-56341-057 PTPN21 ENSG00000258789
GH14J088533 Enhancer 0.4 Ensembl 0.4 -18.3 -18296 0.2 USF1 BHLHE40 USF2 CEBPB PTPN21 piR-56341-057 ENSG00000258789
GH14J088546 Enhancer 0.2 ENCODE 0.7 -4.8 -4755 0.1 ENSG00000258789 PTPN21 piR-56341-057
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258789 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000258789 Gene

Genomic Locations for ENSG00000258789 Gene
chr14:88,551,597-88,552,493
(GRCh38/hg38)
Size:
897 bases
Orientation:
Plus strand
chr14:89,017,941-89,018,837
(GRCh37/hg19)
Size:
897 bases
Orientation:
Plus strand

Genomic View for ENSG00000258789 Gene

Genes around ENSG00000258789 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000258789 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258789 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258789 Gene

Proteins for ENSG00000258789 Gene

Post-translational modifications for ENSG00000258789 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258789 Gene

Domains & Families for ENSG00000258789 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258789 Gene

Function for ENSG00000258789 Gene

Phenotypes From GWAS Catalog for ENSG00000258789 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258789 Gene

Localization for ENSG00000258789 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258789 Gene

Pathways & Interactions for ENSG00000258789 Gene

PathCards logo

SuperPathways for ENSG00000258789 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000258789 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258789 Gene

Drugs & Compounds for ENSG00000258789 Gene

No Compound Related Data Available

Transcripts for ENSG00000258789 Gene

mRNA/cDNA for ENSG00000258789 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258789 Gene

No ASD Table

Relevant External Links for ENSG00000258789 Gene

GeneLoc Exon Structure for
ENSG00000258789

Expression for ENSG00000258789 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258789 Gene

genes like me logo Genes that share expression patterns with ENSG00000258789: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258789 Gene

Orthologs for ENSG00000258789 Gene

Evolution for ENSG00000258789 Gene

ENSEMBL:
Gene Tree for ENSG00000258789 (if available)
TreeFam:
Gene Tree for ENSG00000258789 (if available)

No data available for Orthologs for ENSG00000258789 Gene

Paralogs for ENSG00000258789 Gene

No data available for Paralogs for ENSG00000258789 Gene

Variants for ENSG00000258789 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258789 Gene

Disorders for ENSG00000258789 Gene

No disorders were found for ENSG00000258789 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258789 Gene

Publications for ENSG00000258789 Gene

No publications were found for ENSG00000258789 Gene.

No data available for Mastermind for ENSG00000258789 Gene

Products for ENSG00000258789 Gene

Sources for ENSG00000258789 Gene