Aliases for ENSG00000258702 Gene

Data sources for ENSG00000258702 Gene:

Subcategory (RNA class) for ENSG00000258702 Gene

lncRNA

Aliases for ENSG00000258702 Gene

External Ids for ENSG00000258702 Gene

Previous GeneCards Identifiers for ENSG00000258702 Gene

  • GC14P097061

Summaries for ENSG00000258702 Gene

GeneCards Summary for ENSG00000258702 Gene

ENSG00000258702 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258702 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258702 Gene

Genomics for ENSG00000258702 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J096573 Enhancer 1 Ensembl ENCODE 250.7 -1.0 -1016 2.8 FEZF1 ZNF610 ZNF341 RXRA ZNF843 KLF9 FOXA2 PRDM6 KLF16 ZNF2 ENSG00000258702 PAPOLA ENSG00000260806 ATG2B NONHSAG015832.2 VRK1
GH14J096577 Enhancer 0.4 FANTOM5 Ensembl 250.7 +1.6 1637 0.9 ENSG00000258702 HSALNG0103525 PAPOLA VRK1
GH14J096592 Promoter 0.8 Ensembl 12.6 +17.3 17284 1.8 ELF1 REST GABPB1 MAZ POLR2A NRF1 L3MBTL2 MEIS2 ZNF687 ID3 ENSG00000258702 HSALNG0103525 PAPOLA VRK1
GH14J096584 Enhancer 1.4 UCNEbase Ensembl ENCODE CraniofacialAtlas 0.4 +9.9 9860 1.9 ZNF217 CTCF ELF1 REST ZNF341 EBF1 SMC3 RAD21 YY1 ZNF316 PAPOLA ENSG00000258702 HSALNG0103525 VRK1
GH14J096614 Enhancer 0.7 UCNEbase Ensembl 0.3 +39.5 39474 0.6 FOXA2 PKNOX1 POLR2A HSALNG0103525 ENSG00000258702 PAPOLA VRK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258702 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258702 Gene

Latest Assembly
chr14:96,575,217-96,605,990
(GRCh38/hg38)
Size:
30,774 bases
Orientation:
Plus strand

Previous Assembly
chr14:97,059,070-97,062,099
(GRCh37/hg19 by Ensembl)
Size:
3,030 bases
Orientation:
Plus strand

Genomic View for ENSG00000258702 Gene

Genes around ENSG00000258702 on UCSC Golden Path with GeneCards custom track
ENSG00000258702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258702 Gene

Proteins for ENSG00000258702 Gene

Post-translational modifications for ENSG00000258702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258702 Gene

Domains & Families for ENSG00000258702 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258702 Gene

Function for ENSG00000258702 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258702 Gene

Localization for ENSG00000258702 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258702 Gene

Pathways & Interactions for ENSG00000258702 Gene

PathCards logo

SuperPathways for ENSG00000258702 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258702 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258702 Gene

Drugs & Compounds for ENSG00000258702 Gene

No Compound Related Data Available

Transcripts for ENSG00000258702 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258702 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF4BCB_9606 lncRNA 2716 1

Ensembl: ENST00000662143 (view in UCSC) ,

URS0000EEFC55_9606 lncRNA 2449 1

Ensembl: ENST00000665251 (view in UCSC) ,

URS0000EF5827_9606 lncRNA 2423 1

Ensembl: ENST00000654134 (view in UCSC) ,

URS0000EF333D_9606 lncRNA 2135 1

Ensembl: ENST00000660184 (view in UCSC) ,

URS0000EF5571_9606 lncRNA 1678 1

Ensembl: ENST00000555496 (view in UCSC) ,

ENSG00000258702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ENSG00000258702 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258702 Gene

No ASD Table

Relevant External Links for ENSG00000258702 Gene

GeneLoc Exon Structure for
ENSG00000258702

Expression for ENSG00000258702 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258702 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258702 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x9.3), Brain - Putamen (basal ganglia) (x7.0), and Brain - Caudate (basal ganglia) (x6.8).
genes like me logo Genes that share expression patterns with ENSG00000258702: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258702 Gene

Orthologs for ENSG00000258702 Gene

Evolution for ENSG00000258702 Gene

ENSEMBL:
Gene Tree for ENSG00000258702 (if available)
TreeFam:
Gene Tree for ENSG00000258702 (if available)

No data available for Orthologs for ENSG00000258702 Gene

Paralogs for ENSG00000258702 Gene

No data available for Paralogs for ENSG00000258702 Gene

Variants for ENSG00000258702 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258702 Gene

Disorders for ENSG00000258702 Gene

No disorders were found for ENSG00000258702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258702 Gene

Publications for ENSG00000258702 Gene

No publications were found for ENSG00000258702 Gene.

No data available for Mastermind for ENSG00000258702 Gene

Products for ENSG00000258702 Gene

Sources for ENSG00000258702 Gene