Aliases for ENSG00000258670 Gene

Subcategory (RNA class) for ENSG00000258670 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000258670 Gene

  • Novel Transcript, Antisense To C14orf39 5
  • NONHSAG015155.2 91
  • AL049874.3 5
  • Lnc-SIX6-1 165

External Ids for ENSG00000258670 Gene

Previous GeneCards Identifiers for ENSG00000258670 Gene

  • GC14P060981

Summaries for ENSG00000258670 Gene

GeneCards Summary for ENSG00000258670 Gene

ENSG00000258670 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258670 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258670 Gene

Genomics for ENSG00000258670 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258670 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J060514 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 610.4 +0.1 109 2.1 PRDM10 CTCF POLR2A PATZ1 EZH2 ZNF341 KLF9 ZBTB20 SP2 RNF2 ENSG00000258670 C14orf39 SIX6
GH14J060515 Enhancer 0.4 ENCODE 600.7 -1.0 -1005 0 CBX2 CBX8 EZH2 C14orf39 ENSG00000258670 SIX6
GH14J060562 Enhancer 0.8 Ensembl ENCODE 15.4 +48.7 48682 3.6 CTCF REST RAD21 TRIM22 RELB JUND SMARCA5 RUNX3 SMC3 GATA3 C14orf39 ENSG00000258670 piR-38583-004 ENSG00000258764 lnc-SIX6-2 SIX1
GH14J060511 Enhancer 0.3 Ensembl 0.7 -3.8 -3818 0.2 EZH2 CBX8 C14orf39 ENSG00000258670 SIX6
GH14J060510 Enhancer 0.4 Ensembl 0.4 -5.4 -5418 0.2 POLR2A EZH2 CBX8 SIX6 lnc-SIX1-4 C14orf39 ENSG00000258670
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258670 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258670 Gene

Genomic Locations for ENSG00000258670 Gene
chr14:60,515,119-60,554,916
(GRCh38/hg38)
Size:
39,798 bases
Orientation:
Plus strand
chr14:60,981,837-61,021,634
(GRCh37/hg19)
Size:
39,798 bases
Orientation:
Plus strand

Genomic View for ENSG00000258670 Gene

Genes around ENSG00000258670 on UCSC Golden Path with GeneCards custom track
ENSG00000258670 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258670 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258670 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258670 Gene

Proteins for ENSG00000258670 Gene

Post-translational modifications for ENSG00000258670 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258670 Gene

Domains & Families for ENSG00000258670 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258670 Gene

Function for ENSG00000258670 Gene

Phenotypes From GWAS Catalog for ENSG00000258670 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258670 Gene

Localization for ENSG00000258670 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258670 Gene

Pathways & Interactions for ENSG00000258670 Gene

PathCards logo

SuperPathways for ENSG00000258670 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258670 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258670 Gene

Drugs & Compounds for ENSG00000258670 Gene

No Compound Related Data Available

Transcripts for ENSG00000258670 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258670 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001970C4_9606 lncRNA 868 3

Ensembl: ENST00000557618 (view in UCSC) ,

LNCipedia: lnc-SIX6-1:1,

NONCODE: NONHSAT037221.2,

ENSG00000258670 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258670 Gene

No ASD Table

Relevant External Links for ENSG00000258670 Gene

GeneLoc Exon Structure for
ENSG00000258670

No data available for mRNA/cDNA for ENSG00000258670 Gene

Expression for ENSG00000258670 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258670 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258670 Gene

This gene is overexpressed in Pituitary (x28.2) and Muscle - Skeletal (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000258670: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258670 Gene

Orthologs for ENSG00000258670 Gene

Evolution for ENSG00000258670 Gene

ENSEMBL:
Gene Tree for ENSG00000258670 (if available)
TreeFam:
Gene Tree for ENSG00000258670 (if available)

No data available for Orthologs for ENSG00000258670 Gene

Paralogs for ENSG00000258670 Gene

No data available for Paralogs for ENSG00000258670 Gene

Variants for ENSG00000258670 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258670 Gene

Disorders for ENSG00000258670 Gene

Additional Disease Information for ENSG00000258670

No disorders were found for ENSG00000258670 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000258670 Gene

Publications for ENSG00000258670 Gene

No publications were found for ENSG00000258670 Gene.

No data available for Mastermind for ENSG00000258670 Gene

Products for ENSG00000258670 Gene

Sources for ENSG00000258670 Gene