Aliases for ENSG00000258663 Gene

Subcategory (RNA class) for ENSG00000258663 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258663 Gene

  • Novel Transcript, Antisense To MEG3 5
  • NONHSAG015925.2 91
  • HSALNG0103783 164
  • AL117190.2 5
  • Lnc-RTL1-1 165

External Ids for ENSG00000258663 Gene

Previous GeneCards Identifiers for ENSG00000258663 Gene

  • GC14M101300

Summaries for ENSG00000258663 Gene

GeneCards Summary for ENSG00000258663 Gene

ENSG00000258663 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258663 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258663 Gene

Genomics for ENSG00000258663 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258663 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J100862 Enhancer 0.8 Ensembl ENCODE 0.7 -3.5 -3496 3.1 IKZF1 POLR2A HDAC1 EP300 GTF2E2 MEF2D ZBTB5 FOSL1 ARNT STAT5A ENSG00000258663 MIR493 ENSG00000258399 RTL1 DLK1
GH14J100851 Enhancer 1 Ensembl ENCODE 0.4 +9.7 9655 0.7 HNRNPL GATAD2A CTCF ZNF692 ZIC2 PATZ1 REST RAD21 IRF2 ZNF24 MIR770 lnc-RTL1-11 ENSG00000258663 ENSG00000258399 GQ183494 RTL1 MEG3 DLK1
GH14J100833 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +22.1 22074 10.9 ZNF629 KDM1A RCOR2 ZIC2 CEBPA SCRT2 CEBPB TSHZ1 ESRRA FOS MEG3 MIR493 MIR337 MIR127 MIR431 MIR433 MIR136 RTL1 SNORD112 MIR370
GH14J100852 Enhancer 0.5 Ensembl 0.4 +9.1 9125 0.2 EGR1 KLF4 ZFHX2 EGR2 CTCF MIR770 lnc-RTL1-11 ENSG00000258663 ENSG00000258399 GQ183494 RTL1 MEG3 DLK1
GH14J100845 Enhancer 0.3 Ensembl dbSUPER 0.4 +15.9 15925 0.2 ENSG00000258399 lnc-RTL1-11 ENSG00000258663 GQ183494 RTL1 MEG3 DLK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258663 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258663 Gene

Genomic Locations for ENSG00000258663 Gene
chr14:100,834,432-100,861,026
(GRCh38/hg38)
Size:
26,595 bases
Orientation:
Minus strand
chr14:101,300,769-101,327,363
(GRCh37/hg19)
Size:
26,595 bases
Orientation:
Minus strand

Genomic View for ENSG00000258663 Gene

Genes around ENSG00000258663 on UCSC Golden Path with GeneCards custom track
ENSG00000258663 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258663 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258663 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258663 Gene

Proteins for ENSG00000258663 Gene

Post-translational modifications for ENSG00000258663 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258663 Gene

Domains & Families for ENSG00000258663 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258663 Gene

Function for ENSG00000258663 Gene

Phenotypes From GWAS Catalog for ENSG00000258663 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258663 Gene

Localization for ENSG00000258663 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258663 Gene

Pathways & Interactions for ENSG00000258663 Gene

PathCards logo

SuperPathways for ENSG00000258663 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258663 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258663 Gene

Drugs & Compounds for ENSG00000258663 Gene

No Compound Related Data Available

Transcripts for ENSG00000258663 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258663 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004160C6_9606 lncRNA 289 4

Ensembl: ENST00000554041 (view in UCSC) ,

LncBook: HSALNT0215949,

LNCipedia: lnc-RTL1-1:1,

NONCODE: NONHSAT039773.2,

URS0000D5961D_9606 lncRNA 281 1

LNCipedia: lnc-RTL1-1:3,

ENSG00000258663 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258663 Gene

No ASD Table

Relevant External Links for ENSG00000258663 Gene

GeneLoc Exon Structure for
ENSG00000258663

No data available for mRNA/cDNA for ENSG00000258663 Gene

Expression for ENSG00000258663 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258663 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258663 Gene

This gene is overexpressed in Pituitary (x7.4), Adrenal Gland (x5.0), and Ovary (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000258663: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258663 Gene

Orthologs for ENSG00000258663 Gene

Evolution for ENSG00000258663 Gene

ENSEMBL:
Gene Tree for ENSG00000258663 (if available)
TreeFam:
Gene Tree for ENSG00000258663 (if available)

No data available for Orthologs for ENSG00000258663 Gene

Paralogs for ENSG00000258663 Gene

No data available for Paralogs for ENSG00000258663 Gene

Variants for ENSG00000258663 Gene

Variation tolerance for ENSG00000258663 Gene

Gene Damage Index Score: 0.38; 8.47% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000258663 Gene

Disorders for ENSG00000258663 Gene

No disorders were found for ENSG00000258663 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258663 Gene

Publications for ENSG00000258663 Gene

No publications were found for ENSG00000258663 Gene.

No data available for Mastermind for ENSG00000258663 Gene

Products for ENSG00000258663 Gene

Sources for ENSG00000258663 Gene