Aliases for ENSG00000258553 Gene

Subcategory (RNA class) for ENSG00000258553 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258553 Gene

  • Novel Transcript, Antisense To LRRC9 5
  • NONHSAG015140.2 91
  • HSALNG0101680 164
  • Lnc-DHRS7-2 165
  • AL157911.1 5

External Ids for ENSG00000258553 Gene

Previous GeneCards Identifiers for ENSG00000258553 Gene

  • GC14M060435

Summaries for ENSG00000258553 Gene

GeneCards Summary for ENSG00000258553 Gene

ENSG00000258553 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258553 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258553 Gene

Genomics for ENSG00000258553 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258553 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J060090 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.9 -1867 6.2 CEBPG HNRNPL CREB1 GATAD2A ATF7 TEAD4 PRDM10 ZNF629 TFE3 RFX1 PCNX4 ENSG00000258553 LOC105370524 DHRS7 L3HYPDH TRMT5 piR-32214-191
GH14J060087 Enhancer 0.7 Ensembl 0.7 +4.0 3950 0.2 IKZF1 HDAC1 SOX6 EP300 CTBP1 MYC NCOR1 NFIC POLR2A TAL1 DHRS7 ENSG00000258553 LOC105370524 PCNX4 RF00994-327 LRRC9
GH14J060088 Enhancer 0.3 Ensembl 0.7 +2.7 2650 0.8 CEBPB HLF DHRS7 ENSG00000258553 LOC105370524 PCNX4 RF00994-327 LRRC9
GH14J060064 Enhancer 0.5 ENCODE 0.3 +27.2 27163 0.1 CTCF PRDM1 REST RAD21 TRIM22 SMC3 RFX5 ZNF654 PKNOX1 RF00994-327 ENSG00000258553 LOC105370524 PCNX4 LRRC9
GH14J060051 Enhancer 0.6 Ensembl ENCODE 0.3 +40.2 40150 1.4 RUNX3 EBF1 YY1 DHRS7 RF00994-327 piR-48222-126 LOC105370524 PCNX4 ENSG00000258553 LRRC9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258553 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258553 Gene

Genomic Locations for ENSG00000258553 Gene
chr14:59,969,116-60,091,851
(GRCh38/hg38)
Size:
122,736 bases
Orientation:
Minus strand
chr14:60,435,834-60,558,501
(GRCh37/hg19)
Size:
122,668 bases
Orientation:
Minus strand

Genomic View for ENSG00000258553 Gene

Genes around ENSG00000258553 on UCSC Golden Path with GeneCards custom track
ENSG00000258553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258553 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258553 Gene

Proteins for ENSG00000258553 Gene

Post-translational modifications for ENSG00000258553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258553 Gene

Domains & Families for ENSG00000258553 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258553 Gene

Function for ENSG00000258553 Gene

Phenotypes From GWAS Catalog for ENSG00000258553 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258553 Gene

Localization for ENSG00000258553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258553 Gene

Pathways & Interactions for ENSG00000258553 Gene

PathCards logo

SuperPathways for ENSG00000258553 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258553 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258553 Gene

Drugs & Compounds for ENSG00000258553 Gene

No Compound Related Data Available

Transcripts for ENSG00000258553 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258553 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000029D2B5_9606 lncRNA 491 4

Ensembl: ENST00000555432 (view in UCSC) ,

LncBook: HSALNT0211798,

LNCipedia: lnc-DHRS7-2:2,

NONCODE: NONHSAT037197.2,

URS00004E749E_9606 lncRNA 502 3

Ensembl: ENST00000554123 (view in UCSC) ,

LNCipedia: lnc-DHRS7-2:1,

NONCODE: NONHSAT037196.2,

URS0000D5CC21_9606 lncRNA 555 2

LncBook: HSALNT0211797,

LNCipedia: lnc-DHRS7-2:7,

URS0000D5DD78_9606 lncRNA 440 2

LncBook: HSALNT0211800,

LNCipedia: lnc-DHRS7-2:3,

URS00009B5B7B_9606 lncRNA 295 2

LncBook: HSALNT0211799,

NONCODE: NONHSAT169383.1,

ENSG00000258553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258553 Gene

No ASD Table

Relevant External Links for ENSG00000258553 Gene

GeneLoc Exon Structure for
ENSG00000258553

No data available for mRNA/cDNA for ENSG00000258553 Gene

Expression for ENSG00000258553 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258553 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258553 Gene

This gene is overexpressed in Testis (x38.7).
genes like me logo Genes that share expression patterns with ENSG00000258553: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258553 Gene

Orthologs for ENSG00000258553 Gene

Evolution for ENSG00000258553 Gene

ENSEMBL:
Gene Tree for ENSG00000258553 (if available)
TreeFam:
Gene Tree for ENSG00000258553 (if available)

No data available for Orthologs for ENSG00000258553 Gene

Paralogs for ENSG00000258553 Gene

No data available for Paralogs for ENSG00000258553 Gene

Variants for ENSG00000258553 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258553 Gene

Disorders for ENSG00000258553 Gene

No disorders were found for ENSG00000258553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258553 Gene

Publications for ENSG00000258553 Gene

No publications were found for ENSG00000258553 Gene.

No data available for Mastermind for ENSG00000258553 Gene

Products for ENSG00000258553 Gene

Sources for ENSG00000258553 Gene