ENSG00000258534 Gene (RNA Gene)

 

GC14M103854
GIFtS:
8

Aliases for ENSG00000258534 Gene

Subcategory (RNA class) for ENSG00000258534 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000258534 Gene

  • Novel Transcript 5
  • Lnc-PPP1R13B-1 168
  • NONHSAG016037 92
  • HSALNG0104042 167
  • AL132712.1 5

External Ids for ENSG00000258534 Gene

Previous GeneCards Identifiers for ENSG00000258534 Gene

  • GC14M104362
  • GC14M104363

Summaries for ENSG00000258534 Gene

GeneCards Summary for ENSG00000258534 Gene

ENSG00000258534 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258534 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258534 Gene

Genomics for ENSG00000258534 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000258534 Gene

Promoters and enhancers for ENSG00000258534 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14J103879 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 505.9 -0.9 -944 4.4 ZNF217 ZSCAN5C POLR2G NCOR1 KDM6A ZBTB25 TGIF2 ZBTB7A SKI TEAD1 ENSG00000258534 LOC105370690 TDRD9 KLC1 ATP5MPL LOC105370689 lnc-TDRD9-3
GH14J103878 Enhancer 0.2 dbSUPER 500.7 +1.7 1729 0.5 ENSG00000258534 LOC105370690 TDRD9 ATP5MPL LOC105370689
GH14J103887 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 5.4 -9.8 -9804 4.1 FOXK2 POLR2G ZIC2 TCF7 RFX1 ZBTB25 TGIF2 CTBP1 FOXA2 ZSCAN9 PPP1R13B ATP5MPL KLC1 TDRD9 ENSG00000258534 ENSG00000269958 TRMT61A lnc-TDRD9-3
GH14J103894 Enhancer 0.9 Ensembl ENCODE dbSUPER 4.9 -14.6 -14590 1.8 GABPB1 NR2F2 ELF1 RXRA HNF4A NR2F6 EGR2 ETV5 HNRNPL SP1 TDRD9 PPP1R13B KLC1 ENSG00000258534 lnc-TDRD9-3 lnc-TDRD9-2
GH14J103888 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 -6.1 -6088 0.7 CTCF POLR2G ZIC2 SKI CEBPB RAD21 GABPB1 NR2F2 ZFHX2 DRAP1 TDRD9 PPP1R13B ENSG00000269958 ENSG00000258534 lnc-TDRD9-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258534 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000258534 Gene

Genomic Locations for ENSG00000258534 Gene
chr14:103,854,366-103,880,111
(GRCh38/hg38)
Size:
25,746 bases
Orientation:
Minus strand
chr14:104,320,703-104,346,448
(GRCh37/hg19)
Size:
25,746 bases
Orientation:
Minus strand

Genomic View for ENSG00000258534 Gene

Genes around ENSG00000258534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000258534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258534 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000258534 Gene

Proteins for ENSG00000258534 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000258534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258534 Gene

Domains & Families for ENSG00000258534 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258534 Gene

Function for ENSG00000258534 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000258534 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258534 Gene

Localization for ENSG00000258534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258534 Gene

Pathways & Interactions for ENSG00000258534 Gene

PathCards logo

SuperPathways for ENSG00000258534 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000258534 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258534 Gene

Drugs & Compounds for ENSG00000258534 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000258534 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000258534 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258534 Gene

No ASD Table

Relevant External Links for ENSG00000258534 Gene

GeneLoc Exon Structure for
ENSG00000258534

Expression for ENSG00000258534 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258534 Gene

mRNA expression in normal human tissues for ENSG00000258534 Gene
mRNA expression by GTEx for ENSG00000258534 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258534 Gene

This gene is overexpressed in Liver (x8.1) and Colon - Transverse (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000258534: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258534 Gene

Orthologs for ENSG00000258534 Gene

Evolution for ENSG00000258534 Gene

ENSEMBL:
Gene Tree for ENSG00000258534 (if available)
TreeFam:
Gene Tree for ENSG00000258534 (if available)

No data available for Orthologs for ENSG00000258534 Gene

Paralogs for ENSG00000258534 Gene

No data available for Paralogs for ENSG00000258534 Gene

Variants for ENSG00000258534 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258534 Gene

Disorders for ENSG00000258534 Gene

No disorders were found for ENSG00000258534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258534 Gene

Publications for ENSG00000258534 Gene

No publications were found for ENSG00000258534 Gene.

No data available for Mastermind for ENSG00000258534 Gene

Products for ENSG00000258534 Gene

Sources for ENSG00000258534 Gene