Aliases for ENSG00000258520 Gene

Subcategory (RNA class) for ENSG00000258520 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258520 Gene

  • Novel Transcript 5
  • NONHSAG015319.2 91
  • HSALNG0102144 164
  • Lnc-DCAF5-2 165
  • AL359317.1 5

External Ids for ENSG00000258520 Gene

Previous GeneCards Identifiers for ENSG00000258520 Gene

  • GC14M069705

Summaries for ENSG00000258520 Gene

GeneCards Summary for ENSG00000258520 Gene

ENSG00000258520 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258520 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258520 Gene

Genomics for ENSG00000258520 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258520 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J069259 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.4 -1357 5.3 GATAD2A CTCF PRDM10 ZNF629 RFX1 ZNF692 ZNF143 ZIC2 PATZ1 SP1 GALNT16 ENSG00000258520 LOC105370550 SRSF5 piR-50444-111 SLC39A9
GH14J069532 Enhancer 0.6 Ensembl ENCODE 5.4 -272.2 -272247 1.2 FOXA1 KLF4 ZNF217 KLF9 FOS ENSG00000258520 SUSD6 lnc-SUSD6-2 CCDC177 ENSG00000286424 PLEKHD1
GH14J069267 Enhancer 0.8 Ensembl ENCODE 0.4 -7.9 -7931 2.6 CREB1 YBX1 TARDBP ZSCAN4 ZNF747 CEBPB ZNF248 ZKSCAN1 CTBP1 BCLAF1 ERH SRSF5 DCAF5 EXD2 SLC39A9 GALNT16 ACTN1 ENSG00000258520 LOC105370550 piR-50444-111
GH14J069247 Enhancer 0.7 Ensembl ENCODE 0.4 +12.7 12738 1.5 CTCF JUND CEBPB NR2F2 MAX RAD21 HLF TRIM22 POLR2A GALNT16 LOC105370550 ENSG00000258520 piR-41433 EXD2
GH14J069242 Enhancer 0.7 Ensembl ENCODE 0.4 +17.7 17680 0.7 CTCF REST RAD21 TRIM22 SCRT2 RUNX3 CBFB SMC3 ZNF654 ACTN1-AS1 piR-41433 ENSG00000258520 LOC105370550 GALNT16 EXD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258520 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258520 Gene

Genomic Locations for ENSG00000258520 Gene
chr14:69,239,166-69,260,567
(GRCh38/hg38)
Size:
21,402 bases
Orientation:
Minus strand
chr14:69,705,883-69,727,284
(GRCh37/hg19)
Size:
21,402 bases
Orientation:
Minus strand

Genomic View for ENSG00000258520 Gene

Genes around ENSG00000258520 on UCSC Golden Path with GeneCards custom track
ENSG00000258520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258520 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258520 Gene

Proteins for ENSG00000258520 Gene

Post-translational modifications for ENSG00000258520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258520 Gene

Domains & Families for ENSG00000258520 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258520 Gene

Function for ENSG00000258520 Gene

Phenotypes From GWAS Catalog for ENSG00000258520 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258520 Gene

Localization for ENSG00000258520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258520 Gene

Pathways & Interactions for ENSG00000258520 Gene

PathCards logo

SuperPathways for ENSG00000258520 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258520 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258520 Gene

Drugs & Compounds for ENSG00000258520 Gene

No Compound Related Data Available

Transcripts for ENSG00000258520 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258520 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001ED771_9606 lncRNA 578 3

Ensembl: ENST00000556316 (view in UCSC) ,

LNCipedia: lnc-DCAF5-2:1, lnc-DCAF5-2:4,

NONCODE: NONHSAT037516.2,

URS00008B4E9D_9606 lncRNA 351 3

LncBook: HSALNT0212622,

LNCipedia: lnc-DCAF5-2:3,

NONCODE: NONHSAT037517.2,

URS0000D5BB58_9606 lncRNA 3033 2

LncBook: HSALNT0212618,

LNCipedia: lnc-DCAF5-2:5,

URS00008B67FA_9606 lncRNA 349 2

LNCipedia: lnc-DCAF5-2:2,

NONCODE: NONHSAT037518.2,

URS00009B3B5F_9606 lncRNA 939 1

NONCODE: NONHSAT169458.1,

ENSG00000258520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258520 Gene

No ASD Table

Relevant External Links for ENSG00000258520 Gene

GeneLoc Exon Structure for
ENSG00000258520

No data available for mRNA/cDNA for ENSG00000258520 Gene

Expression for ENSG00000258520 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258520 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258520 Gene

This gene is overexpressed in Testis (x7.0), Brain - Putamen (basal ganglia) (x6.3), Brain - Caudate (basal ganglia) (x5.0), and Brain - Hypothalamus (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000258520: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258520 Gene

Orthologs for ENSG00000258520 Gene

Evolution for ENSG00000258520 Gene

ENSEMBL:
Gene Tree for ENSG00000258520 (if available)
TreeFam:
Gene Tree for ENSG00000258520 (if available)

No data available for Orthologs for ENSG00000258520 Gene

Paralogs for ENSG00000258520 Gene

No data available for Paralogs for ENSG00000258520 Gene

Variants for ENSG00000258520 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258520 Gene

Disorders for ENSG00000258520 Gene

Additional Disease Information for ENSG00000258520

No disorders were found for ENSG00000258520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000258520 Gene

Publications for ENSG00000258520 Gene

No publications were found for ENSG00000258520 Gene.

No data available for Mastermind for ENSG00000258520 Gene

Products for ENSG00000258520 Gene

Sources for ENSG00000258520 Gene