Aliases for ENSG00000258428 Gene

Subcategory (RNA class) for ENSG00000258428 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258428 Gene

  • Novel Transcript, Antisense To C14orf101 5
  • NONHSAG015066.2 91
  • HSALNG0101531 164
  • AL161757.2 5
  • Lnc-OTX2-9 165

External Ids for ENSG00000258428 Gene

Previous GeneCards Identifiers for ENSG00000258428 Gene

  • GC14M057099

Summaries for ENSG00000258428 Gene

GeneCards Summary for ENSG00000258428 Gene

ENSG00000258428 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258428 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258428 Gene

Genomics for ENSG00000258428 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258428 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J056648 Enhancer 0.6 Ensembl ENCODE 600.7 +0.3 257 1.6 EZH2 FOSL2 JUND CREB1 ENSG00000258428 LOC105370515 ENSG00000259133 TMEM260 OTX2
GH14J056649 Enhancer 0.2 Ensembl 600.7 -0.8 -843 0.2 ENSG00000258428 lnc-TMEM260-6 ENSG00000259133 TMEM260 OTX2
GH14J057389 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 19.6 -742.5 -742543 5.2 PRDM10 ZNF629 POLR2A ZNF692 JUND FOXA1 LARP7 PRDM1 ZIC2 RBFOX2 NAA30 ENSG00000258682 ENSG00000258428 PSMA3-AS1 HMGB1P14 lnc-NAA30-3 CCDC198
GH14J055802 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +843.2 843237 6.4 CREB1 ZNF629 TFE3 CTCF ZNF692 JUND PKNOX1 ZNF24 PATZ1 SP1 ENSG00000258428 SOCS4 ATG14 MAPK1IP1L LINC00520 piR-47675-033 KTN1 PELI2
GH14J056952 Enhancer 1.2 VISTA UCNEbase Ensembl ENCODE 9.7 -304.9 -304851 2.4 CTCF ZNF350 TMEM260 ENSG00000258428 RPL3P3 ENSG00000258776 ENSG00000286257 OTX2 OTX2-AS1 EXOC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258428 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258428 Gene

Genomic Locations for ENSG00000258428 Gene
chr14:56,633,244-56,648,658
(GRCh38/hg38)
Size:
15,415 bases
Orientation:
Minus strand
chr14:57,099,962-57,115,376
(GRCh37/hg19)
Size:
15,415 bases
Orientation:
Minus strand

Genomic View for ENSG00000258428 Gene

Genes around ENSG00000258428 on UCSC Golden Path with GeneCards custom track
ENSG00000258428 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258428 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258428 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258428 Gene

Proteins for ENSG00000258428 Gene

Post-translational modifications for ENSG00000258428 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258428 Gene

Domains & Families for ENSG00000258428 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258428 Gene

Function for ENSG00000258428 Gene

Phenotypes From GWAS Catalog for ENSG00000258428 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258428 Gene

Localization for ENSG00000258428 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258428 Gene

Pathways & Interactions for ENSG00000258428 Gene

PathCards logo

SuperPathways for ENSG00000258428 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258428 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258428 Gene

Drugs & Compounds for ENSG00000258428 Gene

No Compound Related Data Available

Transcripts for ENSG00000258428 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258428 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000000252F_9606 lncRNA 397 4

Ensembl: ENST00000555924 (view in UCSC) ,

LncBook: HSALNT0211482,

LNCipedia: lnc-OTX2-9:1,

NONCODE: NONHSAT037057.2,

URS000052FBB2_9606 lncRNA 421 3

Ensembl: ENST00000553800 (view in UCSC) ,

LNCipedia: lnc-OTX2-9:2,

NONCODE: NONHSAT037056.2,

URS00009B272C_9606 lncRNA 249 2

LncBook: HSALNT0211484,

NONCODE: NONHSAT169359.1,

ENSG00000258428 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258428 Gene

No ASD Table

Relevant External Links for ENSG00000258428 Gene

GeneLoc Exon Structure for
ENSG00000258428

No data available for mRNA/cDNA for ENSG00000258428 Gene

Expression for ENSG00000258428 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258428 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258428 Gene

This gene is overexpressed in Testis (x14.5).
genes like me logo Genes that share expression patterns with ENSG00000258428: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258428 Gene

Orthologs for ENSG00000258428 Gene

Evolution for ENSG00000258428 Gene

ENSEMBL:
Gene Tree for ENSG00000258428 (if available)
TreeFam:
Gene Tree for ENSG00000258428 (if available)

No data available for Orthologs for ENSG00000258428 Gene

Paralogs for ENSG00000258428 Gene

No data available for Paralogs for ENSG00000258428 Gene

Variants for ENSG00000258428 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258428 Gene

Disorders for ENSG00000258428 Gene

Additional Disease Information for ENSG00000258428

No disorders were found for ENSG00000258428 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000258428 Gene

Publications for ENSG00000258428 Gene

No publications were found for ENSG00000258428 Gene.

No data available for Mastermind for ENSG00000258428 Gene

Products for ENSG00000258428 Gene

Sources for ENSG00000258428 Gene