Aliases for ENSG00000258425 Gene

Subcategory (RNA class) for ENSG00000258425 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000258425 Gene

  • Novel Transcript, Antisense To LTBP2 5
  • NONHSAG015464.2 91
  • AC013451.1 5

External Ids for ENSG00000258425 Gene

Previous GeneCards Identifiers for ENSG00000258425 Gene

  • GC14P075018

Summaries for ENSG00000258425 Gene

GeneCards Summary for ENSG00000258425 Gene

ENSG00000258425 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258425 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258425 Gene

Genomics for ENSG00000258425 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258425 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J074551 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 +0.4 384 3.1 TEAD4 ZSCAN4 NR2F2 RCOR1 YY1 TEAD3 CHD2 GATA2 NFIB ENSG00000258425 LTBP2 ABCD4 SYNDIG1L FCF1 ENSG00000222604 ENSG00000259005 EIF2B2 NPC2
GH14J074550 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.9 -1880 0.2 STAT1 ENSG00000258425 LTBP2 SYNDIG1L HSALNG0102443 NPC2
GH14J074548 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.9 -2884 1.8 CTCF ZFX CEBPB FOXA2 RAD21 GATA3 SMC3 TRIM22 LTBP2 SYNDIG1L ENSG00000258425 HSALNG0102443 NPC2
GH14J074564 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +18.4 18369 11.5 CTCF TEAD4 PRDM10 ZNF629 KDM1A ZNF692 PRDM1 ZNF776 ZSCAN4 PATZ1 MIDEAS YLPM1 ZNF410 ENSG00000259138 ENSG00000258559 MLH3 FCF1 PROX2 LTBP2 NT5CP1
GH14J074547 Enhancer 0.6 Ensembl dbSUPER 0.7 -4.2 -4180 0.8 REST ZFX FOXA2 MIER2 LTBP2 SYNDIG1L ENSG00000258425 HSALNG0102443 NPC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258425 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258425 Gene

Genomic Locations for ENSG00000258425 Gene
chr14:74,552,181-74,560,048
(GRCh38/hg38)
Size:
7,868 bases
Orientation:
Plus strand
chr14:75,018,884-75,026,751
(GRCh37/hg19)
Size:
7,868 bases
Orientation:
Plus strand

Genomic View for ENSG00000258425 Gene

Genes around ENSG00000258425 on UCSC Golden Path with GeneCards custom track
ENSG00000258425 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258425 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258425 Gene

Proteins for ENSG00000258425 Gene

Post-translational modifications for ENSG00000258425 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258425 Gene

Domains & Families for ENSG00000258425 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258425 Gene

Function for ENSG00000258425 Gene

Phenotypes From GWAS Catalog for ENSG00000258425 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258425 Gene

Localization for ENSG00000258425 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258425 Gene

Pathways & Interactions for ENSG00000258425 Gene

PathCards logo

SuperPathways for ENSG00000258425 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258425 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258425 Gene

Drugs & Compounds for ENSG00000258425 Gene

No Compound Related Data Available

Transcripts for ENSG00000258425 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258425 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024D6CD_9606 lncRNA 518 2

Ensembl: ENST00000554552 (view in UCSC) ,

NONCODE: NONHSAT037797.2,

ENSG00000258425 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258425 Gene

No ASD Table

Relevant External Links for ENSG00000258425 Gene

GeneLoc Exon Structure for
ENSG00000258425

No data available for mRNA/cDNA for ENSG00000258425 Gene

Expression for ENSG00000258425 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258425 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258425 Gene

This gene is overexpressed in Artery - Coronary (x6.6) and Spleen (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000258425: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258425 Gene

Orthologs for ENSG00000258425 Gene

Evolution for ENSG00000258425 Gene

ENSEMBL:
Gene Tree for ENSG00000258425 (if available)
TreeFam:
Gene Tree for ENSG00000258425 (if available)

No data available for Orthologs for ENSG00000258425 Gene

Paralogs for ENSG00000258425 Gene

No data available for Paralogs for ENSG00000258425 Gene

Variants for ENSG00000258425 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258425 Gene

Disorders for ENSG00000258425 Gene

Additional Disease Information for ENSG00000258425

No disorders were found for ENSG00000258425 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000258425 Gene

Publications for ENSG00000258425 Gene

No publications were found for ENSG00000258425 Gene.

No data available for Mastermind for ENSG00000258425 Gene

Products for ENSG00000258425 Gene

Sources for ENSG00000258425 Gene