Aliases for ENSG00000258256 Gene

Subcategory (RNA class) for ENSG00000258256 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258256 Gene

  • Novel Transcript, Antisense To CA13 5
  • NONHSAG050659.2 91
  • HSALNG0066702 164
  • Lnc-C8orf59-1 165
  • AC011773.3 5

External Ids for ENSG00000258256 Gene

Previous GeneCards Identifiers for ENSG00000258256 Gene

  • GC08M086134

Summaries for ENSG00000258256 Gene

GeneCards Summary for ENSG00000258256 Gene

ENSG00000258256 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258256 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258256 Gene

Genomics for ENSG00000258256 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258256 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J085244 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.2 -152 1.9 CREB1 CTCF PRDM10 LEF1 IKZF1 RFX5 ZNF692 POLR2A BACH1 ETV6 ENSG00000258256 CA13 LRRCC1 ENSG00000257962 LOC105375935 RBIS CA3
GH08J085219 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +24.7 24699 4 SP1 GATAD2A CTCF PRDM10 REST POLR2A JUND GABPA PRDM1 DDX20 CA13 RBIS lnc-CA1-2 lnc-CA13-1 LRRCC1 ENSG00000258256 LOC105375936
GH08J085236 Enhancer 0.6 Ensembl ENCODE 0.4 +9.3 9326 2 PKNOX1 CEBPG MEIS2 RF00017-7159 LRRCC1 ENSG00000258256 LOC105375936 CA13 RBIS CA3
GH08J085239 Enhancer 0.3 ENCODE 0.4 +5.8 5818 1.1 NFIA LRRCC1 LOC105375936 ENSG00000258256 RF00017-7159 CA13 RBIS CA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258256 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258256 Gene

Genomic Locations for ENSG00000258256 Gene
chr8:85,222,446-85,245,717
(GRCh38/hg38)
Size:
23,272 bases
Orientation:
Minus strand
chr8:86,134,675-86,157,946
(GRCh37/hg19)
Size:
23,272 bases
Orientation:
Minus strand

Genomic View for ENSG00000258256 Gene

Genes around ENSG00000258256 on UCSC Golden Path with GeneCards custom track
ENSG00000258256 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258256 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258256 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258256 Gene

Proteins for ENSG00000258256 Gene

Post-translational modifications for ENSG00000258256 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258256 Gene

Domains & Families for ENSG00000258256 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258256 Gene

Function for ENSG00000258256 Gene

Phenotypes From GWAS Catalog for ENSG00000258256 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258256 Gene

Localization for ENSG00000258256 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258256 Gene

Pathways & Interactions for ENSG00000258256 Gene

PathCards logo

SuperPathways for ENSG00000258256 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258256 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258256 Gene

Drugs & Compounds for ENSG00000258256 Gene

No Compound Related Data Available

Transcripts for ENSG00000258256 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258256 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D045C_9606 lncRNA 790 4

Ensembl: ENST00000549291 (view in UCSC) ,

LncBook: HSALNT0139735,

LNCipedia: lnc-C8orf59-1:2,

NONCODE: NONHSAT127522.2,

URS00007BDE3B_9606 lncRNA 589 2

Ensembl: ENST00000546501 (view in UCSC) ,

LNCipedia: lnc-C8orf59-1:3,

ENSG00000258256 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258256 Gene

No ASD Table

Relevant External Links for ENSG00000258256 Gene

GeneLoc Exon Structure for
ENSG00000258256

No data available for mRNA/cDNA for ENSG00000258256 Gene

Expression for ENSG00000258256 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258256 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258256 Gene

This gene is overexpressed in Testis (x37.1).
genes like me logo Genes that share expression patterns with ENSG00000258256: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258256 Gene

Orthologs for ENSG00000258256 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000258256 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 99 (a)
OneToOne
Species where no ortholog for ENSG00000258256 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000258256 Gene

ENSEMBL:
Gene Tree for ENSG00000258256 (if available)
TreeFam:
Gene Tree for ENSG00000258256 (if available)

Paralogs for ENSG00000258256 Gene

No data available for Paralogs for ENSG00000258256 Gene

Variants for ENSG00000258256 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258256 Gene

Disorders for ENSG00000258256 Gene

No disorders were found for ENSG00000258256 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258256 Gene

Publications for ENSG00000258256 Gene

No publications were found for ENSG00000258256 Gene.

No data available for Mastermind for ENSG00000258256 Gene

Products for ENSG00000258256 Gene

Sources for ENSG00000258256 Gene