Aliases for ENSG00000258254 Gene

Subcategory (RNA class) for ENSG00000258254 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258254 Gene

  • Novel Transcript 5
  • NONHSAG012383.2 91
  • HSALNG0094224 164
  • Lnc-SDSL-13 165
  • AC010177.2 5

External Ids for ENSG00000258254 Gene

Previous GeneCards Identifiers for ENSG00000258254 Gene

  • GC12P115059

Summaries for ENSG00000258254 Gene

GeneCards Summary for ENSG00000258254 Gene

ENSG00000258254 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258254 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258254 Gene

Genomics for ENSG00000258254 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J114625 Enhancer 0.9 Ensembl ENCODE 0.7 +4.1 4131 0.7 GATAD2A CTCF RXRB RAD21 IRF2 TRIM22 KLF9 SP1 HMBOX1 EGR1 TBX3 ENSG00000258254 ENSG00000199220 TBX5
GH12J114611 Enhancer 0.9 ENCODE 0.4 -9.7 -9740 1.2 GATAD2A ATF7 REST TFE3 SOX13 NFKBIZ RXRB IRF2 SP1 GABPA HSALNG0094220 ENSG00000258254 TBX3 TBX5
GH12J114655 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +35.9 35926 4.7 GATAD2A ZNF629 TFE3 ZNF512 SOX13 ZNF692 RCOR2 JUND ZIC2 RBFOX2 ENSG00000199220 RBM19 TBX3 ENSG00000258254 TBX5
GH12J114635 Enhancer 0.8 Ensembl ENCODE 0.4 +15.1 15104 1.7 ARHGAP35 CTCF ZNF512 FOXA1 ZSCAN4 ZNF600 ZFX CTBP1 GATA3 RAD21 ENSG00000258254 ENSG00000199220 TBX3 TBX5
GH12J114639 Enhancer 0.7 Ensembl ENCODE 0.4 +19.1 19108 3.2 TEAD4 ZNF512 KDM1A SOX13 TCF7 ZNF366 NFIA SOX5 NANOG SP1 ENSG00000258254 ENSG00000199220 TBX3 TBX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258254 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258254 Gene

Genomic Locations for ENSG00000258254 Gene
chr12:114,621,507-114,622,922
(GRCh38/hg38)
Size:
1,416 bases
Orientation:
Plus strand
chr12:115,059,566-115,060,727
(GRCh37/hg19)
Size:
1,162 bases
Orientation:
Plus strand

Genomic View for ENSG00000258254 Gene

Genes around ENSG00000258254 on UCSC Golden Path with GeneCards custom track
ENSG00000258254 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258254 Gene

Proteins for ENSG00000258254 Gene

Post-translational modifications for ENSG00000258254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258254 Gene

Domains & Families for ENSG00000258254 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258254 Gene

Function for ENSG00000258254 Gene

Phenotypes From GWAS Catalog for ENSG00000258254 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258254 Gene

Localization for ENSG00000258254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258254 Gene

Pathways & Interactions for ENSG00000258254 Gene

PathCards logo

SuperPathways for ENSG00000258254 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258254 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258254 Gene

Drugs & Compounds for ENSG00000258254 Gene

No Compound Related Data Available

Transcripts for ENSG00000258254 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258254 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C0623_9606 lncRNA 366 4

Ensembl: ENST00000547819 (view in UCSC) ,

LncBook: HSALNT0195289,

LNCipedia: lnc-SDSL-13:2,

NONCODE: NONHSAT030885.2,

URS00008B8844_9606 lncRNA 622 2

LNCipedia: lnc-SDSL-13:1,

NONCODE: NONHSAT030884.2,

URS00009B5CC1_9606 lncRNA 573 2

LncBook: HSALNT0195286,

NONCODE: NONHSAT162790.1,

URS00009B98BF_9606 lncRNA 439 2

LncBook: HSALNT0195287,

NONCODE: NONHSAT162791.1,

ENSG00000258254 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258254 Gene

No ASD Table

Relevant External Links for ENSG00000258254 Gene

GeneLoc Exon Structure for
ENSG00000258254

No data available for mRNA/cDNA for ENSG00000258254 Gene

Expression for ENSG00000258254 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258254 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258254 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000258254: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258254 Gene

Orthologs for ENSG00000258254 Gene

Evolution for ENSG00000258254 Gene

ENSEMBL:
Gene Tree for ENSG00000258254 (if available)
TreeFam:
Gene Tree for ENSG00000258254 (if available)

No data available for Orthologs for ENSG00000258254 Gene

Paralogs for ENSG00000258254 Gene

No data available for Paralogs for ENSG00000258254 Gene

Variants for ENSG00000258254 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258254 Gene

Disorders for ENSG00000258254 Gene

No disorders were found for ENSG00000258254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258254 Gene

Publications for ENSG00000258254 Gene

No publications were found for ENSG00000258254 Gene.

No data available for Mastermind for ENSG00000258254 Gene

Products for ENSG00000258254 Gene

Sources for ENSG00000258254 Gene