ENSG00000258253 Gene (RNA Gene)

 

GC12P052380
GIFtS:
6

Aliases for ENSG00000258253 Gene

Subcategory (RNA class) for ENSG00000258253 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000258253 Gene

  • Novel Transcript, Antisense To KRT84 And KRT82 5
  • HSALNG0091181 167
  • NONHSAG011194 92
  • AC078865.1 5

External Ids for ENSG00000258253 Gene

Previous GeneCards Identifiers for ENSG00000258253 Gene

  • GC12P052774

Summaries for ENSG00000258253 Gene

GeneCards Summary for ENSG00000258253 Gene

ENSG00000258253 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258253 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258253 Gene

Genomics for ENSG00000258253 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000258253 Gene

Promoters and enhancers for ENSG00000258253 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J052371 Enhancer 0.9 Ensembl ENCODE 0.4 -8.4 -8446 2 ZNF217 CTCF GABPA REST RAD21 TRIM22 SMC3 DEK ZBTB17 CEBPG AAAS KRT86 ENSG00000257337 KRT85 ENSG00000258253
GH12J052390 Enhancer 0.9 Ensembl ENCODE 0.4 +10.7 10656 3.8 CTCF TEAD4 ZIC2 SMC3 MXI1 ZNF266 ZNF316 ZNF263 ZBTB11 NFE2 KRT86 SP1 HNRNPA3P10 ZNF740 AAAS CSAD KRT6C ENSG00000257808 KRT71 KRT83
GH12J052395 Enhancer 0.6 ENCODE 0.4 +15.5 15492 0.2 CTCF MYC USF1 GATAD2B YY1 MAZ RAD21 ZEB2 SRF MNT KRT83 KRT71 KRT6C KRT86 KRT84 KRT82 ENSG00000258253
GH12J052385 Promoter 0.3 EPDnew 0.4 +5.2 5212 0.1 KRT84 ENSG00000258253
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258253 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000258253 Gene

Genomic Locations for ENSG00000258253 Gene
chr12:52,380,460-52,402,407
(GRCh38/hg38)
Size:
21,948 bases
Orientation:
Plus strand
chr12:52,774,244-52,796,191
(GRCh37/hg19)
Size:
21,948 bases
Orientation:
Plus strand

Genomic View for ENSG00000258253 Gene

Genes around ENSG00000258253 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000258253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258253 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000258253 Gene

Proteins for ENSG00000258253 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000258253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258253 Gene

Domains & Families for ENSG00000258253 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258253 Gene

Function for ENSG00000258253 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258253 Gene

Localization for ENSG00000258253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258253 Gene

Pathways & Interactions for ENSG00000258253 Gene

PathCards logo

SuperPathways for ENSG00000258253 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000258253 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258253 Gene

Drugs & Compounds for ENSG00000258253 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000258253 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000258253 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258253 Gene

No ASD Table

Relevant External Links for ENSG00000258253 Gene

GeneLoc Exon Structure for
ENSG00000258253

Expression for ENSG00000258253 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258253 Gene

mRNA expression in normal human tissues for ENSG00000258253 Gene
mRNA expression by GTEx for ENSG00000258253 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258253 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x39.2) and Skin - Sun Exposed (Lower leg) (x10.1).
genes like me logo Genes that share expression patterns with ENSG00000258253: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258253 Gene

Orthologs for ENSG00000258253 Gene

Evolution for ENSG00000258253 Gene

ENSEMBL:
Gene Tree for ENSG00000258253 (if available)
TreeFam:
Gene Tree for ENSG00000258253 (if available)

No data available for Orthologs for ENSG00000258253 Gene

Paralogs for ENSG00000258253 Gene

No data available for Paralogs for ENSG00000258253 Gene

Variants for ENSG00000258253 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258253 Gene

Disorders for ENSG00000258253 Gene

No disorders were found for ENSG00000258253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258253 Gene

Publications for ENSG00000258253 Gene

No publications were found for ENSG00000258253 Gene.

No data available for Mastermind for ENSG00000258253 Gene

Products for ENSG00000258253 Gene

Sources for ENSG00000258253 Gene