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Aliases for ENSG00000258253 Gene
Subcategory (RNA class) for ENSG00000258253 Gene
lncRNA
Number of RNA Genes sources:
2 / 17
Aliases for ENSG00000258253 Gene
External Ids for ENSG00000258253 Gene
- Ensembl: ENSG00000258253
Previous GeneCards Identifiers for ENSG00000258253 Gene
- GC12P052774
Summaries for ENSG00000258253 Gene
GeneCards Summary for ENSG00000258253 Gene
ENSG00000258253 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000258253 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258253 Gene
Genomics for ENSG00000258253 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000258253 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J052371 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | -8.4 | -8446 | 2 | CEBPG CTCF ZNF174 REST RAD21 ZNF501 TRIM22 CEBPA BRCA1 SCRT2 | AAAS KRT86 ENSG00000257337 KRT85 ENSG00000258253 KRT84 ENSG00000257500 | |
| GH12J052390 | Enhancer | 0.8 | Ensembl ENCODE | 0.4 | +10.7 | 10656 | 3.8 | CTCF TEAD4 YBX1 ZIC2 ZBTB20 NFE2 ZNF444 ZNF316 ZNF266 SMC3 | KRT86 SP1 HNRNPA3P10 ZNF740 AAAS CSAD KRT6C ENSG00000257808 KRT71 KRT83 | |
| GH12J052395 | Enhancer | 0.6 | ENCODE | 0.4 | +15.5 | 15492 | 0.2 | CTCF SMARCA5 ZNF444 USF1 YY1 MYC GATAD2B MAZ ZEB2 ZNF143 | KRT83 KRT71 KRT6C KRT86 KRT84 KRT82 ENSG00000258253 ENSG00000257500 | |
| GH12J052367 | Promoter | 0.4 | EPDnew | 0.4 | -13.0 | -12959 | 0.1 | WT1 | KRT85 ENSG00000258253 KRT84 ENSG00000257500 | |
| GH12J052385 | Promoter | 0.3 | EPDnew | 0.4 | +5.2 | 5212 | 0.1 | KRT84 ENSG00000258253 KRT85 ENSG00000257500 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000258253 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000258253 Gene
Genomic Locations for ENSG00000258253 Gene
- chr12:52,380,460-52,402,407
- (GRCh38/hg38)
- Size:
- 21,948 bases
- Orientation:
- Plus strand
- chr12:52,774,244-52,796,191
- (GRCh37/hg19)
- Size:
- 21,948 bases
- Orientation:
- Plus strand
Genomic View for ENSG00000258253 Gene
Genes around ENSG00000258253 on UCSC Golden Path with GeneCards custom track
ENSG00000258253 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q13.13 by Ensembl
ENSG00000258253 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000258253 Gene
Proteins for ENSG00000258253 Gene
Post-translational modifications for ENSG00000258253 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000258253
- Origene Custom Protein Services for ENSG00000258253
No data available for DME Specific Peptides for ENSG00000258253 Gene
Domains & Families for ENSG00000258253 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258253 Gene
Function for ENSG00000258253 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for ENSG00000258253
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258253 Gene
Localization for ENSG00000258253 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258253 Gene
Transcripts for ENSG00000258253 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258253 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000540DFD_9606 | lncRNA | 562 | 3 |
Ensembl: ENST00000547174 (view in UCSC) , LncBook: HSALNT0189203, NONCODE: NONHSAT028363.2, |
ENSG00000258253 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Browse CRISPR knockouts for ENSG00000258253
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for ENSG00000258253 Gene
- GeneLoc Exon Structure for
- ENSG00000258253
No data available for mRNA/cDNA for ENSG00000258253 Gene
Expression for ENSG00000258253 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000258253 Gene
This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x39.2) and Skin - Sun Exposed (Lower leg) (x10.1).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258253 Gene
Orthologs for ENSG00000258253 Gene
No data available for Orthologs for ENSG00000258253 Gene
Paralogs for ENSG00000258253 Gene
No data available for Paralogs for ENSG00000258253 Gene
Variants for ENSG00000258253 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258253 Gene
Disorders for ENSG00000258253 Gene
No disorders were found for ENSG00000258253 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258253 Gene
Publications for ENSG00000258253 Gene
No publications were found for ENSG00000258253 Gene.
No data available for Mastermind for ENSG00000258253 Gene
Products for ENSG00000258253 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000258253
- Origene Custom Protein Services for ENSG00000258253
- Browse OriGene Inhibitory RNA Products For ENSG00000258253
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000258253
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000258253
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000258253
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000258253
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000258253
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000258253
Sources for ENSG00000258253 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB