Aliases for ENSG00000258249 Gene

Subcategory (RNA class) for ENSG00000258249 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000258249 Gene

  • Novel Transcript 5
  • NONHSAG012426.2 91
  • Lnc-MAP1LC3B2-3 165
  • HSALNG0094335 164
  • AC125603.3 5

External Ids for ENSG00000258249 Gene

Previous GeneCards Identifiers for ENSG00000258249 Gene

  • GC12P117037

Summaries for ENSG00000258249 Gene

GeneCards Summary for ENSG00000258249 Gene

ENSG00000258249 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258249 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258249 Gene

Genomics for ENSG00000258249 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258249 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116597 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 600.7 +0.9 888 2.4 CTCF LEF1 IKZF1 JUND MTA2 ZNF24 MTA1 PATZ1 REST NR2C1 ENSG00000258249 FBXW8 MED13L lnc-C12orf49-4 MAP1LC3B2 SPRING1
GH12J116601 Enhancer 0.9 FANTOM5 ENCODE 0.7 +3.7 3701 1.1 JUND CEBPA CEBPB HMBOX1 SMARCC1 ZNF316 FOS MAFK FOSL1 MAFG MAP1LC3B2 MED13L FBXW8 ENSG00000258249 lnc-C12orf49-4 SPRING1
GH12J116593 Enhancer 0.9 FANTOM5 ENCODE 0.7 -3.6 -3609 1.9 REST DPF2 SCRT2 MGA RUNX3 ZNF444 ZBTB17 MYC ZKSCAN1 SCRT1 MAP1LC3B2 MED13L ENSG00000258249 ENSG00000275898 SPRING1
GH12J116582 Enhancer 0.9 Ensembl ENCODE 0.4 -15.3 -15333 0.6 LEF1 IKZF1 JUND PKNOX1 ZNF24 HDAC1 EP300 ZNF766 MTA3 EGR1 ENSG00000275898 MAP1LC3B2 ENSG00000258249 SPRING1
GH12J116609 Enhancer 0.8 Ensembl ENCODE 0.4 +11.7 11666 1.4 CTCF ZIC2 REST RAD21 ZNF740 ZNF341 SMC3 ZNF384 CEBPB FOXK2 ENSG00000258249 lnc-C12orf49-4 MAP1LC3B2 SPRING1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258249 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258249 Gene

Genomic Locations for ENSG00000258249 Gene
chr12:116,598,234-116,603,870
(GRCh38/hg38)
Size:
5,637 bases
Orientation:
Plus strand
chr12:117,037,075-117,041,390
(GRCh37/hg19)
Size:
4,316 bases
Orientation:
Plus strand

Genomic View for ENSG00000258249 Gene

Genes around ENSG00000258249 on UCSC Golden Path with GeneCards custom track
ENSG00000258249 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000258249 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258249 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258249 Gene

Proteins for ENSG00000258249 Gene

Post-translational modifications for ENSG00000258249 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258249 Gene

Domains & Families for ENSG00000258249 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258249 Gene

Function for ENSG00000258249 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258249 Gene

Localization for ENSG00000258249 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258249 Gene

Pathways & Interactions for ENSG00000258249 Gene

PathCards logo

SuperPathways for ENSG00000258249 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258249 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258249 Gene

Drugs & Compounds for ENSG00000258249 Gene

No Compound Related Data Available

Transcripts for ENSG00000258249 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000258249 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000053270B_9606 lncRNA 486 4

Ensembl: ENST00000550742 (view in UCSC) ,

LncBook: HSALNT0195602,

LNCipedia: lnc-MAP1LC3B2-3:1,

NONCODE: NONHSAT030956.2,

URS00009AF981_9606 lncRNA 1133 2

LncBook: HSALNT0195599,

NONCODE: NONHSAT162826.1,

ENSG00000258249 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258249 Gene

No ASD Table

Relevant External Links for ENSG00000258249 Gene

GeneLoc Exon Structure for
ENSG00000258249

No data available for mRNA/cDNA for ENSG00000258249 Gene

Expression for ENSG00000258249 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258249 Gene

genes like me logo Genes that share expression patterns with ENSG00000258249: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258249 Gene

Orthologs for ENSG00000258249 Gene

Evolution for ENSG00000258249 Gene

ENSEMBL:
Gene Tree for ENSG00000258249 (if available)
TreeFam:
Gene Tree for ENSG00000258249 (if available)

No data available for Orthologs for ENSG00000258249 Gene

Paralogs for ENSG00000258249 Gene

No data available for Paralogs for ENSG00000258249 Gene

Variants for ENSG00000258249 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258249 Gene

Disorders for ENSG00000258249 Gene

No disorders were found for ENSG00000258249 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258249 Gene

Publications for ENSG00000258249 Gene

No publications were found for ENSG00000258249 Gene.

No data available for Mastermind for ENSG00000258249 Gene

Products for ENSG00000258249 Gene

Sources for ENSG00000258249 Gene