ENSG00000258249 Gene (RNA Gene)

 

GC12P116599
GIFtS:
6

Aliases for ENSG00000258249 Gene

Subcategory (RNA class) for ENSG00000258249 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000258249 Gene

  • Novel Transcript 5
  • Lnc-MAP1LC3B2-3 168
  • NONHSAG012426 92
  • HSALNG0094335 167
  • AC125603.3 5

External Ids for ENSG00000258249 Gene

Previous GeneCards Identifiers for ENSG00000258249 Gene

  • GC12P117037

Summaries for ENSG00000258249 Gene

GeneCards Summary for ENSG00000258249 Gene

ENSG00000258249 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000258249 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258249 Gene

Genomics for ENSG00000258249 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000258249 Gene

Promoters and enhancers for ENSG00000258249 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J116597 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 500.7 -0.1 -148 2.4 CTCF GTF2E2 REST HES1 ZNF740 TOE1 MYC CTBP1 HINFP SMC3 ENSG00000258249 ENSG00000275898 lnc-C12orf49-4
GH12J116601 Enhancer 0.9 FANTOM5 ENCODE 0.7 +2.7 2665 1.1 TCF12 JUND FOS HDAC2 CEBPB ZNF316 FOSL1 SMARCC1 MAFK ZNF592 MAP1LC3B2 MED13L FBXW8 ENSG00000258249 lnc-C12orf49-4
GH12J116593 Enhancer 0.9 FANTOM5 ENCODE 0.7 -4.6 -4645 1.9 REST MYC RBM25 ZBTB17 ZKSCAN1 CTCF ZNF592 BCOR E2F6 SCRT1 MAP1LC3B2 MED13L ENSG00000258249 ENSG00000275898
GH12J116603 Enhancer 0.6 ENCODE CraniofacialAtlas 0.7 +4.9 4918 1.9 POLR2A SMARCA4 ZBTB33 ENSG00000258249 lnc-C12orf49-4
GH12J116582 Enhancer 0.9 Ensembl ENCODE 0.4 -16.4 -16369 0.6 HES1 MYC ZNF592 PBX2 ZFHX2 BCOR EHMT2 SKIL ZNF644 HDAC2 ENSG00000275898 MAP1LC3B2 ENSG00000258249
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258249 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000258249 Gene

Genomic Locations for ENSG00000258249 Gene
chr12:116,599,270-116,603,585
(GRCh38/hg38)
Size:
4,316 bases
Orientation:
Plus strand
chr12:117,037,075-117,041,390
(GRCh37/hg19)
Size:
4,316 bases
Orientation:
Plus strand

Genomic View for ENSG00000258249 Gene

Genes around ENSG00000258249 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000258249 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258249 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000258249 Gene

Proteins for ENSG00000258249 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000258249 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258249 Gene

Domains & Families for ENSG00000258249 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258249 Gene

Function for ENSG00000258249 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258249 Gene

Localization for ENSG00000258249 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258249 Gene

Pathways & Interactions for ENSG00000258249 Gene

PathCards logo

SuperPathways for ENSG00000258249 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000258249 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258249 Gene

Drugs & Compounds for ENSG00000258249 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000258249 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000258249 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258249 Gene

No ASD Table

Relevant External Links for ENSG00000258249 Gene

GeneLoc Exon Structure for
ENSG00000258249

Expression for ENSG00000258249 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258249 Gene

mRNA expression in normal human tissues for ENSG00000258249 Gene
mRNA expression by GTEx for ENSG00000258249 Gene
genes like me logo Genes that share expression patterns with ENSG00000258249: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258249 Gene

Orthologs for ENSG00000258249 Gene

Evolution for ENSG00000258249 Gene

ENSEMBL:
Gene Tree for ENSG00000258249 (if available)
TreeFam:
Gene Tree for ENSG00000258249 (if available)

No data available for Orthologs for ENSG00000258249 Gene

Paralogs for ENSG00000258249 Gene

No data available for Paralogs for ENSG00000258249 Gene

Variants for ENSG00000258249 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258249 Gene

Disorders for ENSG00000258249 Gene

No disorders were found for ENSG00000258249 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258249 Gene

Publications for ENSG00000258249 Gene

No publications were found for ENSG00000258249 Gene.

No data available for Mastermind for ENSG00000258249 Gene

Products for ENSG00000258249 Gene

Sources for ENSG00000258249 Gene