Aliases for ENSG00000258179 Gene

Aliases for ENSG00000258179 Gene

  • Small Nuclear Ribonucleoprotein D1 Polypeptide 16kDa (SNRPD1) Pseudogene 5
  • AC079598.3 5

External Ids for ENSG00000258179 Gene

Previous GeneCards Identifiers for ENSG00000258179 Gene

  • GC12M088214

Summaries for ENSG00000258179 Gene

GeneCards Summary for ENSG00000258179 Gene

ENSG00000258179 is a Pseudogene.

Additional gene information for ENSG00000258179 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000258179 Gene

Genomics for ENSG00000258179 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000258179 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J087820 Enhancer 0.8 Ensembl ENCODE 605.8 -0.2 -156 1.5 REST CEBPB SP1 BRCA1 ATF3 NR3C1 FOS JUN RCOR1 SIX5 ENSG00000258179 GADD45AP1 lnc-C12orf50-5 piR-30444-086 C12orf29 MGAT4C
GH12J087811 Enhancer 0.8 Ensembl ENCODE 5.6 +7.6 7596 3.5 FOXA1 REST CEBPB SP1 NR3C1 FOS EP300 FOSL2 ESR1 RAD21 ENSG00000258179 ENSG00000257940 MKRN9P C12orf29 MGAT4C
GH12J087826 Enhancer 0.8 Ensembl ENCODE 5.3 -7.2 -7153 2.3 POLR2A SP1 JUND CEBPB FOS ZNF316 JUN MAFF MAFK EP300 ENSG00000258179 GADD45AP1 piR-30444-086 C12orf29 MGAT4C
GH12J087848 Enhancer 0.8 Ensembl ENCODE 4.2 -26.6 -26583 2.6 CTCF FOXA1 REST RAD21 TRIM22 SP1 SMC3 CUX1 RFX5 GATA3 ENSG00000258179 GADD45AP1 piR-30444-086 C12orf29
GH12J087927 Enhancer 0.2 ENCODE 4.4 -107.3 -107309 1 ENSG00000258179 RPS4XP15 lnc-C12orf29-6 piR-30444-086 C12orf29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000258179 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000258179 Gene

Genomic Locations for ENSG00000258179 Gene
chr12:87,820,654-87,820,918
(GRCh38/hg38)
Size:
265 bases
Orientation:
Minus strand
chr12:88,214,431-88,214,695
(GRCh37/hg19)
Size:
265 bases
Orientation:
Minus strand

Genomic View for ENSG00000258179 Gene

Genes around ENSG00000258179 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000258179 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000258179 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000258179 Gene

Proteins for ENSG00000258179 Gene

Post-translational modifications for ENSG00000258179 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000258179 Gene

Domains & Families for ENSG00000258179 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000258179 Gene

Function for ENSG00000258179 Gene

Phenotypes From GWAS Catalog for ENSG00000258179 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000258179 Gene

Localization for ENSG00000258179 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000258179 Gene

Pathways & Interactions for ENSG00000258179 Gene

PathCards logo

SuperPathways for ENSG00000258179 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000258179 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000258179 Gene

Drugs & Compounds for ENSG00000258179 Gene

No Compound Related Data Available

Transcripts for ENSG00000258179 Gene

mRNA/cDNA for ENSG00000258179 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000258179 Gene

No ASD Table

Relevant External Links for ENSG00000258179 Gene

GeneLoc Exon Structure for
ENSG00000258179

Expression for ENSG00000258179 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000258179 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000258179 Gene

This gene is overexpressed in Adipose - Subcutaneous (x22.0), Liver (x11.0), Adipose - Visceral (Omentum) (x5.9), and Breast - Mammary Tissue (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000258179: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000258179 Gene

Orthologs for ENSG00000258179 Gene

Evolution for ENSG00000258179 Gene

ENSEMBL:
Gene Tree for ENSG00000258179 (if available)
TreeFam:
Gene Tree for ENSG00000258179 (if available)

No data available for Orthologs for ENSG00000258179 Gene

Paralogs for ENSG00000258179 Gene

No data available for Paralogs for ENSG00000258179 Gene

Variants for ENSG00000258179 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000258179 Gene

Disorders for ENSG00000258179 Gene

No disorders were found for ENSG00000258179 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000258179 Gene

Publications for ENSG00000258179 Gene

No publications were found for ENSG00000258179 Gene.

No data available for Mastermind for ENSG00000258179 Gene

Products for ENSG00000258179 Gene

Sources for ENSG00000258179 Gene