Aliases for ENSG00000257809 Gene

Subcategory (RNA class) for ENSG00000257809 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000257809 Gene

  • Novel Transcript, Antisense To MYL6B 5
  • HSALNG0091506 169
  • NONHSAG011361 94
  • Lnc-SMARCC2-2 170
  • Lnc-SMARCC2-9 170
  • AC034102.6 5

External Ids for ENSG00000257809 Gene

Previous GeneCards Identifiers for ENSG00000257809 Gene

  • GC12M056544

Summaries for ENSG00000257809 Gene

GeneCards Summary for ENSG00000257809 Gene

ENSG00000257809 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000257809 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000257809 Gene

Genomics for ENSG00000257809 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000257809 Gene

Promoters and enhancers for ENSG00000257809 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J056156 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.7 -1662 6.5 PPP1R10 E2F8 SIN3A SP1 ZBTB40 CTCF ZBTB6 RBPJ SMARCE1 POLR2A MYL6 ENSG00000257809 NONHSAG011362.2-002 lnc-SMARCC2-8 BAZ2A NEMP1 DNAJC14 ZC3H10 SMARCC2 RN7SL809P
GH12J056150 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +4.7 4673 5.3 SP1 ZBTB40 CTCF SIX5 ZBTB6 LCORL POLR2A CREB1 HCFC1 ZNF362 MYL6B NONHSAG011362.2-001 lnc-SMARCC2-9 IKZF4 ENSG00000257740 PHC1P1 NEMP1 PAN2 ENSG00000258199 SMARCC2
GH12J056151 Enhancer 0.9 ENCODE dbSUPER 0.4 +7.5 7478 0.2 ZBTB6 LCORL NFIB BCL6B NCOA3 SP7 ZSCAN21 PRDM1 ZEB2 ZNF629 MYL6B lnc-SMARCC2-9 IKZF4 ENSG00000257740 PHC1P1 ANKRD52 HSPD1P4 PAN2 SMARCC2 ENSG00000258199
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000257809 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000257809 Gene

Genomic Locations for ENSG00000257809 Gene
chr12:56,150,796-56,158,220
(GRCh38/hg38)
Size:
7,425 bases
Orientation:
Minus strand
chr12:56,544,580-56,552,004
(GRCh37/hg19)
Size:
7,425 bases
Orientation:
Minus strand

Genomic View for ENSG00000257809 Gene

Genes around ENSG00000257809 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000257809 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000257809 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000257809 Gene

Proteins for ENSG00000257809 Gene

Post-translational modifications for ENSG00000257809 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000257809 Gene

Domains & Families for ENSG00000257809 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000257809 Gene

Function for ENSG00000257809 Gene

Phenotypes From GWAS Catalog for ENSG00000257809 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000257809 Gene

Localization for ENSG00000257809 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000257809 Gene

Pathways & Interactions for ENSG00000257809 Gene

PathCards logo

SuperPathways for ENSG00000257809 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000257809 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000257809 Gene

Drugs & Compounds for ENSG00000257809 Gene

No Compound Related Data Available

Transcripts for ENSG00000257809 Gene

mRNA/cDNA for ENSG00000257809 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(5) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000257809 Gene

No ASD Table

Relevant External Links for ENSG00000257809 Gene

GeneLoc Exon Structure for
ENSG00000257809

Expression for ENSG00000257809 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000257809 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000257809 Gene

This gene is overexpressed in Whole Blood (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000257809: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000257809 Gene

Orthologs for ENSG00000257809 Gene

Evolution for ENSG00000257809 Gene

ENSEMBL:
Gene Tree for ENSG00000257809 (if available)
TreeFam:
Gene Tree for ENSG00000257809 (if available)

No data available for Orthologs for ENSG00000257809 Gene

Paralogs for ENSG00000257809 Gene

No data available for Paralogs for ENSG00000257809 Gene

Variants for ENSG00000257809 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000257809 Gene

Disorders for ENSG00000257809 Gene

No disorders were found for ENSG00000257809 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000257809 Gene

Publications for ENSG00000257809 Gene

No publications were found for ENSG00000257809 Gene.

No data available for External Links for ENSG00000257809 Gene

Products for ENSG00000257809 Gene

Sources for ENSG00000257809 Gene