Aliases for ENSG00000257781 Gene

Subcategory (RNA class) for ENSG00000257781 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000257781 Gene

  • Novel Transcript 5
  • Lnc-MAP1LC3B2-30 165
  • NONHSAG012405.2 91
  • HSALNG0094293 164
  • AC009387.1 5

External Ids for ENSG00000257781 Gene

Previous GeneCards Identifiers for ENSG00000257781 Gene

  • GC12P116193

Summaries for ENSG00000257781 Gene

GeneCards Summary for ENSG00000257781 Gene

ENSG00000257781 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000257781 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000257781 Gene

Genomics for ENSG00000257781 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000257781 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J115753 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 600.7 +1.3 1299 5.7 RNF2 PRDM10 ZNF512 PRDM1 CTCF CBX2 ZNF366 CBX8 GATA2 ENSG00000257781 MED13L LOC105370003 lnc-MAP1LC3B2-29 lnc-MED13L-3
GH12J115754 Enhancer 0.5 ENCODE 600.7 -2.0 -1951 0.2 CTCF REST RAD21 SMC3 RCOR1 ZNF654 ZNF660 YY1 ENSG00000257781 lnc-MAP1LC3B2-29 LOC105370003 lnc-MED13L-3 MED13L
GH12J115794 Enhancer 0.6 ENCODE 0.3 +39.6 39599 0.2 POLR2A IRF2 CTCF REST FOXA2 TBX3 FEZF1 KDM1A NR2F6 RAD21 ENSG00000200112 piR-35674-116 lnc-MED13L-3 ENSG00000257781 MED13L
GH12J115750 Enhancer 0.2 FANTOM5 0.7 -4.2 -4206 0.2 lnc-MAP1LC3B2-29 ENSG00000257781 LOC105370003 lnc-MED13L-3 MED13L
GH12J115765 Enhancer 0.2 Ensembl 0.4 +9.8 9839 0.2 LOC105370003 lnc-MED13L-3 ENSG00000257781 lnc-MAP1LC3B2-29 piR-35674-116 MED13L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000257781 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000257781 Gene

Genomic Locations for ENSG00000257781 Gene
chr12:115,755,262-115,799,936
(GRCh38/hg38)
Size:
44,675 bases
Orientation:
Plus strand
chr12:116,193,067-116,237,741
(GRCh37/hg19)
Size:
44,675 bases
Orientation:
Plus strand

Genomic View for ENSG00000257781 Gene

Genes around ENSG00000257781 on UCSC Golden Path with GeneCards custom track
ENSG00000257781 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000257781 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000257781 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000257781 Gene

Proteins for ENSG00000257781 Gene

Post-translational modifications for ENSG00000257781 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000257781 Gene

Domains & Families for ENSG00000257781 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000257781 Gene

Function for ENSG00000257781 Gene

Phenotypes From GWAS Catalog for ENSG00000257781 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000257781 Gene

Localization for ENSG00000257781 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000257781 Gene

Pathways & Interactions for ENSG00000257781 Gene

PathCards logo

SuperPathways for ENSG00000257781 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000257781 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000257781 Gene

Drugs & Compounds for ENSG00000257781 Gene

No Compound Related Data Available

Transcripts for ENSG00000257781 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000257781 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000606952_9606 lncRNA 441 4

Ensembl: ENST00000549163 (view in UCSC) ,

LncBook: HSALNT0195463,

LNCipedia: lnc-MAP1LC3B2-30:1,

NONCODE: NONHSAT030917.2,

ENSG00000257781 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000257781 Gene

No ASD Table

Relevant External Links for ENSG00000257781 Gene

GeneLoc Exon Structure for
ENSG00000257781

No data available for mRNA/cDNA for ENSG00000257781 Gene

Expression for ENSG00000257781 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000257781 Gene

genes like me logo Genes that share expression patterns with ENSG00000257781: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000257781 Gene

Orthologs for ENSG00000257781 Gene

Evolution for ENSG00000257781 Gene

ENSEMBL:
Gene Tree for ENSG00000257781 (if available)
TreeFam:
Gene Tree for ENSG00000257781 (if available)

No data available for Orthologs for ENSG00000257781 Gene

Paralogs for ENSG00000257781 Gene

No data available for Paralogs for ENSG00000257781 Gene

Variants for ENSG00000257781 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000257781 Gene

Disorders for ENSG00000257781 Gene

No disorders were found for ENSG00000257781 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000257781 Gene

Publications for ENSG00000257781 Gene

No publications were found for ENSG00000257781 Gene.

No data available for Mastermind for ENSG00000257781 Gene

Products for ENSG00000257781 Gene

Sources for ENSG00000257781 Gene