Aliases for ENSG00000257241 Gene

Subcategory (RNA class) for ENSG00000257241 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000257241 Gene

  • Novel Transcript, Antisense To MYRFL 5
  • NONHSAG011653.2 91
  • Lnc-BEST3-2 165
  • AC078922.1 5

External Ids for ENSG00000257241 Gene

Previous GeneCards Identifiers for ENSG00000257241 Gene

  • GC12M070340

Summaries for ENSG00000257241 Gene

GeneCards Summary for ENSG00000257241 Gene

ENSG00000257241 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000257241 include Colorectal Cancer.

Additional gene information for ENSG00000257241 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000257241 Gene

Genomics for ENSG00000257241 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000257241 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J069948 Enhancer 0.3 Ensembl ENCODE 600.7 -1.9 -1920 1.2 ENSG00000257241 MYRFL piR-38352-123 PRANCR CNOT2
GH12J069965 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.7 -19730 2.8 RFX1 JUND ZNF664 FOS SREBF1 FOSL2 PRANCR RAB3IP ENSG00000257241 piR-38352-123 MYRFL CNOT2
GH12J069951 Enhancer 0.4 Ensembl 0.4 -5.4 -5420 1.4 FOXA1 ZIC2 GATA3 PKNOX1 MYRFL PRANCR ENSG00000257241 piR-38352-123 CNOT2
GH12J069985 Enhancer 0.6 Ensembl ENCODE 0.3 -39.0 -38951 0.9 CTCF PKNOX1 RAD21 CEBPB ZNF143 piR-38352-123 MYRFL ENSG00000257241 CNOT2 PRANCR
GH12J069972 Enhancer 0.5 ENCODE 0.3 -25.3 -25255 0.2 CREB1 CTBP1 KLF4 ZNF217 DPF2 SMARCE1 MNT piR-38352-123 ENSG00000257241 MYRFL PRANCR CNOT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000257241 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000257241 Gene

Genomic Locations for ENSG00000257241 Gene
chr12:69,946,543-69,947,081
(GRCh38/hg38)
Size:
539 bases
Orientation:
Minus strand
chr12:70,340,323-70,340,861
(GRCh37/hg19)
Size:
539 bases
Orientation:
Minus strand

Genomic View for ENSG00000257241 Gene

Genes around ENSG00000257241 on UCSC Golden Path with GeneCards custom track
ENSG00000257241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000257241 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000257241 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000257241 Gene

Proteins for ENSG00000257241 Gene

Post-translational modifications for ENSG00000257241 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000257241 Gene

Domains & Families for ENSG00000257241 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000257241 Gene

Function for ENSG00000257241 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000257241 Gene

Localization for ENSG00000257241 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000257241 Gene

Pathways & Interactions for ENSG00000257241 Gene

PathCards logo

SuperPathways for ENSG00000257241 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000257241 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000257241 Gene

Drugs & Compounds for ENSG00000257241 Gene

No Compound Related Data Available

Transcripts for ENSG00000257241 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000257241 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000035BC4E_9606 lncRNA 434 3

Ensembl: ENST00000547547 (view in UCSC) ,

LNCipedia: lnc-BEST3-2:1,

NONCODE: NONHSAT029389.2,

ENSG00000257241 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000257241 Gene

No ASD Table

Relevant External Links for ENSG00000257241 Gene

GeneLoc Exon Structure for
ENSG00000257241

No data available for mRNA/cDNA for ENSG00000257241 Gene

Expression for ENSG00000257241 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000257241 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000257241 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x9.5), Brain - Cerebellum (x6.5), Brain - Cerebellar Hemisphere (x6.1), and Kidney - Cortex (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000257241: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000257241 Gene

Orthologs for ENSG00000257241 Gene

Evolution for ENSG00000257241 Gene

ENSEMBL:
Gene Tree for ENSG00000257241 (if available)
TreeFam:
Gene Tree for ENSG00000257241 (if available)

No data available for Orthologs for ENSG00000257241 Gene

Paralogs for ENSG00000257241 Gene

No data available for Paralogs for ENSG00000257241 Gene

Variants for ENSG00000257241 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000257241 Gene

Disorders for ENSG00000257241 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000257241 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000257241

genes like me logo Genes that share disorders with ENSG00000257241: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000257241 Gene

Publications for ENSG00000257241 Gene

No publications were found for ENSG00000257241 Gene.

No data available for Mastermind for ENSG00000257241 Gene

Products for ENSG00000257241 Gene

Sources for ENSG00000257241 Gene