Aliases for ENSG00000257194 Gene

Subcategory (RNA class) for ENSG00000257194 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000257194 Gene

  • Novel Transcript 5
  • NONHSAG011877.2 91
  • HSALNG0092958 164
  • Lnc-TMTC3-5 165
  • AC126178.1 5

External Ids for ENSG00000257194 Gene

Previous GeneCards Identifiers for ENSG00000257194 Gene

  • GC12P090502

Summaries for ENSG00000257194 Gene

GeneCards Summary for ENSG00000257194 Gene

ENSG00000257194 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000257194 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000257194 Gene

Genomics for ENSG00000257194 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000257194 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J090099 Enhancer 0.8 FANTOM5 Ensembl 600.7 -1.2 -1220 3 FOXA1 PKNOX1 SP1 JUND OSR2 ATF2 WT1 FOSL2 GATA3 PRDM6 ENSG00000257194 ATP2B1 lnc-ATP2B1-7 LOC105369890 ENSG00000258216 CCER1
GH12J089704 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 4.7 -392.4 -392412 7.4 RNF2 SP1 CREB1 HNRNPL PRDM10 REST ZNF629 LEF1 IKZF1 POLR2A ATP2B1 ATP2B1-AS1 ENSG00000258302 RNU6-148P ENSG00000257194 MN309488 POC1B-GALNT4
GH12J089645 Enhancer 1 Ensembl ENCODE 4.3 -453.8 -453812 5.8 GATAD2A IKZF1 RCOR2 JUND FOXA1 MTA2 PKNOX1 RXRB NR2C1 IRF2 MN309488 ENSG00000257194 lnc-POC1B-GALNT4-3 ATP2B1 POC1B-GALNT4
GH12J089663 Enhancer 0.9 ENCODE 4.3 -436.5 -436542 1.2 PRDM10 LEF1 JUND PRDM1 MTA2 PKNOX1 MTA1 IKZF2 BRD9 DPF2 ENSG00000257194 MN309488 ATP2B1-AS1 ATP2B1 POC1B-GALNT4
GH12J089636 Enhancer 0.6 Ensembl ENCODE 4.3 -464.0 -464011 2.2 SP1 FOS FOSL2 JUNB ENSG00000257194 MN309488 lnc-POC1B-GALNT4-3 ATP2B1 POC1B-GALNT4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000257194 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000257194 Gene

Genomic Locations for ENSG00000257194 Gene
chr12:90,100,712-90,112,779
(GRCh38/hg38)
Size:
12,068 bases
Orientation:
Plus strand
chr12:90,501,516-90,506,556
(GRCh37/hg19)
Size:
5,041 bases
Orientation:
Plus strand

Genomic View for ENSG00000257194 Gene

Genes around ENSG00000257194 on UCSC Golden Path with GeneCards custom track
ENSG00000257194 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000257194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000257194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000257194 Gene

Proteins for ENSG00000257194 Gene

Post-translational modifications for ENSG00000257194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000257194 Gene

Domains & Families for ENSG00000257194 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000257194 Gene

Function for ENSG00000257194 Gene

Phenotypes From GWAS Catalog for ENSG00000257194 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000257194 Gene

Localization for ENSG00000257194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000257194 Gene

Pathways & Interactions for ENSG00000257194 Gene

PathCards logo

SuperPathways for ENSG00000257194 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000257194 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000257194 Gene

Drugs & Compounds for ENSG00000257194 Gene

No Compound Related Data Available

Transcripts for ENSG00000257194 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000257194 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000592038_9606 lncRNA 926 4

Ensembl: ENST00000548722 (view in UCSC) ,

LncBook: HSALNT0192762,

LNCipedia: lnc-TMTC3-5:17,

NONCODE: NONHSAT029839.2,

URS00008BBFAA_9606 lncRNA 207 3

LncBook: HSALNT0192759,

LNCipedia: lnc-TMTC3-5:16,

NONCODE: NONHSAT029838.2,

URS0000D59A4B_9606 lncRNA 5910 2

LncBook: HSALNT0192721,

LNCipedia: lnc-TMTC3-5:7,

URS0000D5A252_9606 lncRNA 5823 2

LncBook: HSALNT0192722,

LNCipedia: lnc-TMTC3-5:8,

URS0000D595E4_9606 lncRNA 5545 2

LncBook: HSALNT0192723,

LNCipedia: lnc-TMTC3-5:9,

ENSG00000257194 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000257194 Gene

No ASD Table

Relevant External Links for ENSG00000257194 Gene

GeneLoc Exon Structure for
ENSG00000257194

No data available for mRNA/cDNA for ENSG00000257194 Gene

Expression for ENSG00000257194 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000257194 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000257194 Gene

This gene is overexpressed in Colon - Transverse (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000257194: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000257194 Gene

Orthologs for ENSG00000257194 Gene

Evolution for ENSG00000257194 Gene

ENSEMBL:
Gene Tree for ENSG00000257194 (if available)
TreeFam:
Gene Tree for ENSG00000257194 (if available)

No data available for Orthologs for ENSG00000257194 Gene

Paralogs for ENSG00000257194 Gene

No data available for Paralogs for ENSG00000257194 Gene

Variants for ENSG00000257194 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000257194 Gene

Disorders for ENSG00000257194 Gene

Additional Disease Information for ENSG00000257194

No disorders were found for ENSG00000257194 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000257194 Gene

Publications for ENSG00000257194 Gene

No publications were found for ENSG00000257194 Gene.

No data available for Mastermind for ENSG00000257194 Gene

Products for ENSG00000257194 Gene

Sources for ENSG00000257194 Gene