Aliases for ENSG00000257002 Gene

Subcategory (RNA class) for ENSG00000257002 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000257002 Gene

  • Novel Transcript 5
  • HSALNG0084676 169
  • NONHSAG008556 94
  • AP000438.1 5

External Ids for ENSG00000257002 Gene

Previous GeneCards Identifiers for ENSG00000257002 Gene

  • GC11P062677

Summaries for ENSG00000257002 Gene

GeneCards Summary for ENSG00000257002 Gene

ENSG00000257002 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000257002 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000257002 Gene

Genomics for ENSG00000257002 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000257002 Gene

Promoters and enhancers for ENSG00000257002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062908 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.1 -122 1.3 CTCF RAD21 SP1 ZIC2 REST ZBTB8A CTBP1 POLR2A ZBTB20 SMC3 ENSG00000257002 BSCL2 CHRM1 HSALNG0084674
GH11J062878 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 -27.7 -27702 5.9 SIN3A ZBTB40 SP1 CTCF SREBF1 ZBTB6 SMARCE1 RBPJ POLR2A TCF7L2 SLC3A2 HSALNG0084674 lnc-CHRM1-1 SNHG1 NXF1 GANAB EML3 CSKMT MTA2 TMEM179B
GH11J062906 Enhancer 1 ENCODE dbSUPER 0.6 -3.4 -3402 0.2 CTCF SMARCE1 CC2D1A MAX RAD21 TEAD4 ZNF148 SP7 SMARCA4 IKZF1 SLC22A6 TMEM223 ENSG00000257002 HSALNG0084674
GH11J062887 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -19.8 -19787 4 SIN3A MLX POLR2A NR2F6 ZNF362 HLF L3MBTL2 ZNF121 TEAD4 TFE3 NXF1 BSCL2 EML3 GANAB TAF6L TMEM179B STX5 SNHG1 MTA2 TUT1
GH11J062892 Enhancer 0.7 Ensembl 0.4 -16.8 -16845 0.2 SMARCE1 ZSCAN21 SMARCA4 TRIM24 DPF2 ATF1 HDAC1 ZNF316 SOX6 CTBP1 SLC3A2 SNHG1 SNORD22 SLC22A6 AHNAK HSALNG0084674 ENSG00000257002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000257002 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000257002 Gene

Genomic Locations for ENSG00000257002 Gene
chr11:62,909,546-62,918,361
(GRCh38/hg38)
Size:
8,816 bases
Orientation:
Plus strand
chr11:62,677,018-62,685,833
(GRCh37/hg19)
Size:
8,816 bases
Orientation:
Plus strand

Genomic View for ENSG00000257002 Gene

Genes around ENSG00000257002 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000257002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000257002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000257002 Gene

Proteins for ENSG00000257002 Gene

Post-translational modifications for ENSG00000257002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000257002 Gene

Domains & Families for ENSG00000257002 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000257002 Gene

Function for ENSG00000257002 Gene

Phenotypes From GWAS Catalog for ENSG00000257002 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000257002 Gene

Localization for ENSG00000257002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000257002 Gene

Pathways & Interactions for ENSG00000257002 Gene

PathCards logo

SuperPathways for ENSG00000257002 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000257002 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000257002 Gene

Drugs & Compounds for ENSG00000257002 Gene

No Compound Related Data Available

Transcripts for ENSG00000257002 Gene

mRNA/cDNA for ENSG00000257002 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000257002 Gene

No ASD Table

Relevant External Links for ENSG00000257002 Gene

GeneLoc Exon Structure for
ENSG00000257002

Expression for ENSG00000257002 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000257002 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000257002 Gene

This gene is overexpressed in Brain - Cortex (x7.7), Brain - Frontal Cortex (BA9) (x7.3), Brain - Anterior cingulate cortex (BA24) (x5.5), and Brain - Nucleus accumbens (basal ganglia) (x5.5).
genes like me logo Genes that share expression patterns with ENSG00000257002: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000257002 Gene

Orthologs for ENSG00000257002 Gene

Evolution for ENSG00000257002 Gene

ENSEMBL:
Gene Tree for ENSG00000257002 (if available)
TreeFam:
Gene Tree for ENSG00000257002 (if available)

No data available for Orthologs for ENSG00000257002 Gene

Paralogs for ENSG00000257002 Gene

No data available for Paralogs for ENSG00000257002 Gene

Variants for ENSG00000257002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000257002 Gene

Disorders for ENSG00000257002 Gene

No disorders were found for ENSG00000257002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000257002 Gene

Publications for ENSG00000257002 Gene

No publications were found for ENSG00000257002 Gene.

No data available for External Links for ENSG00000257002 Gene

Products for ENSG00000257002 Gene

Sources for ENSG00000257002 Gene