Aliases for ENSG00000256982 Gene

Subcategory (RNA class) for ENSG00000256982 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000256982 Gene

  • Novel Transcript 5
  • NONHSAG020319.2 91
  • NONHSAG020318.2 91
  • Lnc-CBFA2T3-1 165
  • HSALNG0113571 164
  • AC135782.1 5

External Ids for ENSG00000256982 Gene

Previous GeneCards Identifiers for ENSG00000256982 Gene

  • GC16M089113

Summaries for ENSG00000256982 Gene

GeneCards Summary for ENSG00000256982 Gene

ENSG00000256982 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000256982 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000256982 Gene

Genomics for ENSG00000256982 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000256982 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089052 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +0.2 228 2.3 HNRNPL CREB1 IKZF1 FOXA1 RBFOX2 REST NR2C1 ZFX CEBPB CTCF ENSG00000256982 ACSF3 piR-55985-068 CBFA2T3
GH16J089059 Enhancer 1.1 FANTOM5 Ensembl ENCODE 5.3 -8.0 -7960 2.2 SP1 STAT3 RELA TRIM22 PKNOX1 MNT RELB RUNX3 GATAD2B POLR2A ACSF3 ENSG00000256982 CBFA2T3 LOC105371411 HSALNG0113573
GH16J089066 Enhancer 0.9 FANTOM5 Ensembl ENCODE 5.9 -12.5 -12535 0.6 ZNF692 DPF2 EGR1 GATAD2B ELF1 ZFHX2 IKZF1 EBF1 MTA2 BHLHE40 LOC105371411 HSALNG0113573 ENSG00000256982 LOC105371412 ACSF3 CBFA2T3
GH16J089047 Enhancer 0.4 CraniofacialAtlas 10 +4.7 4673 1 RBFOX2 PCBP1 NRF1 ENSG00000256982 ZNF276 piR-55985-068 ACSF3 CBFA2T3
GH16J089050 Promoter 0.6 Ensembl 0.7 +2.2 2165 1.2 HNRNPL PRDM10 RBFOX2 SCRT2 HIC1 ENSG00000256982 piR-55985-068 ACSF3 CBFA2T3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000256982 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000256982 Gene

Genomic Locations for ENSG00000256982 Gene
chr16:89,040,223-89,052,966
(GRCh38/hg38)
Size:
12,744 bases
Orientation:
Minus strand
chr16:89,112,580-89,119,373
(GRCh37/hg19)
Size:
6,794 bases
Orientation:
Minus strand

Genomic View for ENSG00000256982 Gene

Genes around ENSG00000256982 on UCSC Golden Path with GeneCards custom track
ENSG00000256982 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000256982 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000256982 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000256982 Gene

Proteins for ENSG00000256982 Gene

Post-translational modifications for ENSG00000256982 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000256982 Gene

Domains & Families for ENSG00000256982 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000256982 Gene

Function for ENSG00000256982 Gene

Phenotypes From GWAS Catalog for ENSG00000256982 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000256982 Gene

Localization for ENSG00000256982 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000256982 Gene

Pathways & Interactions for ENSG00000256982 Gene

PathCards logo

SuperPathways for ENSG00000256982 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000256982 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000256982 Gene

Drugs & Compounds for ENSG00000256982 Gene

No Compound Related Data Available

Transcripts for ENSG00000256982 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000256982 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004F8059_9606 lncRNA 2154 3

Ensembl: ENST00000537498 (view in UCSC) ,

LNCipedia: lnc-CBFA2T3-1:1,

NONCODE: NONHSAT144461.2,

URS0000EF7139_9606 lncRNA 1738 1

Ensembl: ENST00000669920 (view in UCSC) ,

URS00008BF0FA_9606 lncRNA 486 3

LncBook: HSALNT0235404,

LNCipedia: lnc-CBFA2T3-1:7,

NONCODE: NONHSAT144460.2,

URS0000D5C8BE_9606 lncRNA 7903 1

LNCipedia: lnc-CBFA2T3-1:2,

URS0000D5DB79_9606 lncRNA 7147 1

LNCipedia: lnc-CBFA2T3-1:5,

ENSG00000256982 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000256982 Gene

No ASD Table

Relevant External Links for ENSG00000256982 Gene

GeneLoc Exon Structure for
ENSG00000256982

No data available for mRNA/cDNA for ENSG00000256982 Gene

Expression for ENSG00000256982 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000256982 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000256982 Gene

This gene is overexpressed in Brain - Cerebellum (x10.7), Brain - Cerebellar Hemisphere (x9.5), Brain - Nucleus accumbens (basal ganglia) (x5.8), and Brain - Cortex (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000256982: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000256982 Gene

Orthologs for ENSG00000256982 Gene

Evolution for ENSG00000256982 Gene

ENSEMBL:
Gene Tree for ENSG00000256982 (if available)
TreeFam:
Gene Tree for ENSG00000256982 (if available)

No data available for Orthologs for ENSG00000256982 Gene

Paralogs for ENSG00000256982 Gene

No data available for Paralogs for ENSG00000256982 Gene

Variants for ENSG00000256982 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000256982 Gene

Disorders for ENSG00000256982 Gene

Additional Disease Information for ENSG00000256982

No disorders were found for ENSG00000256982 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000256982 Gene

Publications for ENSG00000256982 Gene

No publications were found for ENSG00000256982 Gene.

No data available for Mastermind for ENSG00000256982 Gene

Products for ENSG00000256982 Gene

Sources for ENSG00000256982 Gene