Aliases for ENSG00000256973 Gene

Subcategory (RNA class) for ENSG00000256973 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000256973 Gene

  • Novel Transcript 5
  • NONHSAG010669.2 91
  • Lnc-ST8SIA1-1 165
  • AC053513.2 5

External Ids for ENSG00000256973 Gene

Previous GeneCards Identifiers for ENSG00000256973 Gene

  • GC12M022614

Summaries for ENSG00000256973 Gene

GeneCards Summary for ENSG00000256973 Gene

ENSG00000256973 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000256973 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000256973 Gene

Genomics for ENSG00000256973 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000256973 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J021654 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 16.7 +806.9 806913 4 SP1 PRDM10 ZNF512 LEF1 ZNF692 POLR2A JUND LARP7 ZIC2 REST ENSG00000285854 LDHB ENSG00000256973 ENSG00000256615 SPX piR-55948-020 GYS2 lnc-KCNJ8-2
GH12J022436 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +26.8 26804 1.8 NFIC NFIB ST8SIA1 lnc-ST8SIA1-3 C2CD5 ENSG00000250166 ENSG00000256973
GH12J022443 Enhancer 0.9 Ensembl ENCODE 0.4 +20.4 20381 0.7 CTCF KDM1A FOXA1 REST RAD21 IRF2 TRIM22 ZNF561 CTBP1 RUNX3 ST8SIA1 lnc-ST8SIA1-3 ENSG00000256973 ENSG00000250166 C2CD5
GH12J022447 Enhancer 0.4 Ensembl 0.4 +16.5 16513 0.4 ZSCAN5C OSR2 FEZF1 ZNF558 C2CD5 ST8SIA1 lnc-ST8SIA1-3 ENSG00000256973 ENSG00000250166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000256973 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000256973 Gene

Genomic Locations for ENSG00000256973 Gene
chr12:22,460,519-22,463,914
(GRCh38/hg38)
Size:
3,396 bases
Orientation:
Minus strand
chr12:22,613,453-22,616,848
(GRCh37/hg19)
Size:
3,396 bases
Orientation:
Minus strand

Genomic View for ENSG00000256973 Gene

Genes around ENSG00000256973 on UCSC Golden Path with GeneCards custom track
ENSG00000256973 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000256973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000256973 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000256973 Gene

Proteins for ENSG00000256973 Gene

Post-translational modifications for ENSG00000256973 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000256973 Gene

Domains & Families for ENSG00000256973 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000256973 Gene

Function for ENSG00000256973 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000256973 Gene

Localization for ENSG00000256973 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000256973 Gene

Pathways & Interactions for ENSG00000256973 Gene

PathCards logo

SuperPathways for ENSG00000256973 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000256973 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000256973 Gene

Drugs & Compounds for ENSG00000256973 Gene

No Compound Related Data Available

Transcripts for ENSG00000256973 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000256973 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000300EFC_9606 lncRNA 738 3

Ensembl: ENST00000543604 (view in UCSC) ,

LNCipedia: lnc-ST8SIA1-1:1,

NONCODE: NONHSAT027274.2,

ENSG00000256973 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000256973 Gene

No ASD Table

Relevant External Links for ENSG00000256973 Gene

GeneLoc Exon Structure for
ENSG00000256973

No data available for mRNA/cDNA for ENSG00000256973 Gene

Expression for ENSG00000256973 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000256973 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000256973 Gene

This gene is overexpressed in Brain - Cerebellum (x4.6).
genes like me logo Genes that share expression patterns with ENSG00000256973: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000256973 Gene

Orthologs for ENSG00000256973 Gene

Evolution for ENSG00000256973 Gene

ENSEMBL:
Gene Tree for ENSG00000256973 (if available)
TreeFam:
Gene Tree for ENSG00000256973 (if available)

No data available for Orthologs for ENSG00000256973 Gene

Paralogs for ENSG00000256973 Gene

No data available for Paralogs for ENSG00000256973 Gene

Variants for ENSG00000256973 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000256973 Gene

Disorders for ENSG00000256973 Gene

No disorders were found for ENSG00000256973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000256973 Gene

Publications for ENSG00000256973 Gene

No publications were found for ENSG00000256973 Gene.

No data available for Mastermind for ENSG00000256973 Gene

Products for ENSG00000256973 Gene

Sources for ENSG00000256973 Gene