Aliases for ENSG00000255921 Gene

Subcategory (RNA class) for ENSG00000255921 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000255921 Gene

  • Novel Transcript, Antisense To BCAT1 5
  • NONHSAG010698.2 91
  • HSALNG0089886 164
  • AC026310.2 5
  • Lnc-LRMP-2 165

External Ids for ENSG00000255921 Gene

Previous GeneCards Identifiers for ENSG00000255921 Gene

  • GC12P025102

Summaries for ENSG00000255921 Gene

GeneCards Summary for ENSG00000255921 Gene

ENSG00000255921 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000255921 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000255921 Gene

Genomics for ENSG00000255921 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000255921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J024943 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.8 -843 9.6 SP1 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 TFE3 LEF1 IKZF1 NFKBIZ BCAT1 ENSG00000255921 lnc-CASC1-4 C12orf77 KRAS CFAP94 lnc-BCAT1-6 HE856109 SOX5
GH12J024953 Enhancer 0.7 Ensembl 0.4 +5.0 5038 0.8 PRDM10 IKZF1 JUND PRDM1 MTA2 MTA1 HDAC1 SOX6 NFE2 HDAC2 LOC107984475 lnc-BCAT1-6 BCAT1 ENSG00000255921 LOC645177
GH12J024955 Enhancer 0.7 Ensembl 0.4 +6.4 6438 0.8 ZNF512 ZNF143 RELA IKZF2 YY1 ARID3A DPF2 RELB RUNX3 GATAD2B LOC107984475 lnc-BCAT1-6 BCAT1 ENSG00000255921 LOC645177
GH12J024960 Enhancer 0.7 Ensembl 0.4 +11.3 11333 0.6 CTCF JUND ZNF143 PKNOX1 REST RAD21 TRIM22 CBX3 RUNX3 ZNF316 LOC107984475 BRI3P2 lnc-BCAT1-3 ENSG00000255921 BCAT1 LOC645177
GH12J024958 Enhancer 0.2 Ensembl 0.4 +9.6 9638 0.8 LOC107984475 BCAT1 ENSG00000255921 BRI3P2 lnc-BCAT1-3 LOC645177
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255921 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000255921 Gene

Genomic Locations for ENSG00000255921 Gene
chr12:24,949,163-24,964,629
(GRCh38/hg38)
Size:
15,467 bases
Orientation:
Plus strand
chr12:25,102,097-25,113,092
(GRCh37/hg19)
Size:
10,996 bases
Orientation:
Plus strand

Genomic View for ENSG00000255921 Gene

Genes around ENSG00000255921 on UCSC Golden Path with GeneCards custom track
ENSG00000255921 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000255921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255921 Gene

Proteins for ENSG00000255921 Gene

Post-translational modifications for ENSG00000255921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255921 Gene

Domains & Families for ENSG00000255921 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255921 Gene

Function for ENSG00000255921 Gene

Phenotypes From GWAS Catalog for ENSG00000255921 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255921 Gene

Localization for ENSG00000255921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255921 Gene

Pathways & Interactions for ENSG00000255921 Gene

PathCards logo

SuperPathways for ENSG00000255921 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000255921 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255921 Gene

Drugs & Compounds for ENSG00000255921 Gene

No Compound Related Data Available

Transcripts for ENSG00000255921 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000255921 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042B89B_9606 lncRNA 728 4

Ensembl: ENST00000546353 (view in UCSC) ,

LncBook: HSALNT0186701,

LNCipedia: lnc-LRMP-2:1,

NONCODE: NONHSAT027335.2,

URS0000EB5C06_9606 lncRNA 3264 1

LncBook: HSALNT0186705,

URS00019EBB95_9606 lncRNA 1291 1

ENA: MN297142.1:1..1291:ncRNA,

ENSG00000255921 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255921 Gene

No ASD Table

Relevant External Links for ENSG00000255921 Gene

GeneLoc Exon Structure for
ENSG00000255921

No data available for mRNA/cDNA for ENSG00000255921 Gene

Expression for ENSG00000255921 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255921 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000255921 Gene

This gene is overexpressed in Pancreas (x7.4).
genes like me logo Genes that share expression patterns with ENSG00000255921: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255921 Gene

Orthologs for ENSG00000255921 Gene

Evolution for ENSG00000255921 Gene

ENSEMBL:
Gene Tree for ENSG00000255921 (if available)
TreeFam:
Gene Tree for ENSG00000255921 (if available)

No data available for Orthologs for ENSG00000255921 Gene

Paralogs for ENSG00000255921 Gene

No data available for Paralogs for ENSG00000255921 Gene

Variants for ENSG00000255921 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255921 Gene

Disorders for ENSG00000255921 Gene

Additional Disease Information for ENSG00000255921

No disorders were found for ENSG00000255921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000255921 Gene

Publications for ENSG00000255921 Gene

No publications were found for ENSG00000255921 Gene.

No data available for Mastermind for ENSG00000255921 Gene

Products for ENSG00000255921 Gene

Sources for ENSG00000255921 Gene