Aliases for ENSG00000255558 Gene

Subcategory (RNA class) for ENSG00000255558 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000255558 Gene

  • Novel Transcript 5
  • NONHSAG007697.2 91
  • HSALNG0082755 164
  • Lnc-BTBD10-1 165
  • AC013762.1 5

External Ids for ENSG00000255558 Gene

Summaries for ENSG00000255558 Gene

GeneCards Summary for ENSG00000255558 Gene

ENSG00000255558 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000255558 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000255558 Gene

Genomics for ENSG00000255558 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000255558 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J013134 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 600.7 -0.7 -729 2.8 GATAD2A SOX13 RBFOX2 CEBPA TEAD1 NCOR1 CREM SAP130 TBP ZGPAT ENSG00000255558 LINC00958 RASSF10 ENSG00000255018 ARNTL
GH11J013138 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -6.6 -6649 5.1 HNRNPL GATAD2A ATF7 TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB TCF12 RASSF10 ENSG00000255558 ENSG00000255018 ARNTL
GH11J013137 Enhancer 0.7 Ensembl ENCODE 0.7 -3.2 -3176 1.2 GATAD2A ZNF740 SP1 TEAD1 ZSCAN9 FOSL2 JUND ZNF652 JUN RASSF10 ENSG00000255558 ENSG00000255018 ARNTL
GH11J013117 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.9 15939 5.4 SOX13 SP1 CEBPB FOS FOSL2 TBP BHLHE40 MAFK JUND SMAD5 lnc-RASSF10-9 RASSF10 LINC00958 ENSG00000255558 ARNTL
GH11J013108 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +24.3 24289 3.4 JUND IKZF2 HDAC1 PKNOX1 CEBPB SP1 RFX1 DPF2 CTBP1 HDAC2 LINC00958 BTBD10 LOC105376558 ENSG00000255558 RF00994-166 RASSF10 ARNTL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255558 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000255558 Gene

Genomic Locations for ENSG00000255558 Gene
chr11:13,054,615-13,134,840
(GRCh38/hg38)
Size:
80,226 bases
Orientation:
Minus strand
chr11:13,076,162-13,156,386
(GRCh37/hg19)
Size:
80,225 bases
Orientation:
Minus strand

Genomic View for ENSG00000255558 Gene

Genes around ENSG00000255558 on UCSC Golden Path with GeneCards custom track
ENSG00000255558 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000255558 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255558 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255558 Gene

Proteins for ENSG00000255558 Gene

Post-translational modifications for ENSG00000255558 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255558 Gene

Domains & Families for ENSG00000255558 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255558 Gene

Function for ENSG00000255558 Gene

Phenotypes From GWAS Catalog for ENSG00000255558 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255558 Gene

Localization for ENSG00000255558 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255558 Gene

Pathways & Interactions for ENSG00000255558 Gene

PathCards logo

SuperPathways for ENSG00000255558 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000255558 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255558 Gene

Drugs & Compounds for ENSG00000255558 Gene

No Compound Related Data Available

Transcripts for ENSG00000255558 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000255558 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000390A31_9606 lncRNA 467 3

Ensembl: ENST00000531136 (view in UCSC) ,

LNCipedia: lnc-BTBD10-1:1,

NONCODE: NONHSAT018093.2,

URS00009B29F0_9606 lncRNA 467 2

LncBook: HSALNT0172285,

NONCODE: NONHSAT160091.1,

ENSG00000255558 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255558 Gene

No ASD Table

Relevant External Links for ENSG00000255558 Gene

GeneLoc Exon Structure for
ENSG00000255558

No data available for mRNA/cDNA for ENSG00000255558 Gene

Expression for ENSG00000255558 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255558 Gene

genes like me logo Genes that share expression patterns with ENSG00000255558: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255558 Gene

Orthologs for ENSG00000255558 Gene

Evolution for ENSG00000255558 Gene

ENSEMBL:
Gene Tree for ENSG00000255558 (if available)
TreeFam:
Gene Tree for ENSG00000255558 (if available)

No data available for Orthologs for ENSG00000255558 Gene

Paralogs for ENSG00000255558 Gene

No data available for Paralogs for ENSG00000255558 Gene

Variants for ENSG00000255558 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255558 Gene

Disorders for ENSG00000255558 Gene

No disorders were found for ENSG00000255558 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000255558 Gene

Publications for ENSG00000255558 Gene

No publications were found for ENSG00000255558 Gene.

No data available for Mastermind for ENSG00000255558 Gene

Products for ENSG00000255558 Gene

Sources for ENSG00000255558 Gene