Aliases for ENSG00000255542 Gene

Subcategory (RNA class) for ENSG00000255542 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000255542 Gene

  • Novel Transcript 5
  • NONHSAG008056 92
  • HSALNG0083621 167
  • AC090625.2 5
  • Lnc-CD44-2 168

External Ids for ENSG00000255542 Gene

Summaries for ENSG00000255542 Gene

GeneCards Summary for ENSG00000255542 Gene

ENSG00000255542 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000255542 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000255542 Gene

Genomics for ENSG00000255542 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000255542 Gene

Promoters and enhancers for ENSG00000255542 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J035419 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.2 244 2.6 EP300 ZIC2 ZBTB10 ZNF623 ZBTB26 RFX1 SP2 ZBTB17 MXI1 POLR2A SLC1A2 ENSG00000255542
GH11J035389 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 11.8 -27.8 -27835 3.5 FOXK2 ZBTB40 ZNF217 CTCF TCF12 FOS KDM6A CLOCK TCF7 FOXA1 SLC1A2 APIP ENSG00000255542 PDHX MIR1343 lnc-CD44-6 ENSG00000215380
GH11J035387 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -31.3 -31256 1.6 JUND FOS RFX1 CTCF RAD21 RFX5 BMI1 SMC3 RFX3 ZNF770 SLC1A2 ENSG00000255542 APIP PDHX MIR1343 CD44 lnc-CD44-6 ENSG00000215380
GH11J034926 Enhancer 1.1 Ensembl ENCODE 10.4 -491.7 -491702 7.9 CTCF POLR2G NCOR1 KDM6A TCF7 FOXA1 REST CUX1 MYC TGIF2 APIP PDHX ENSG00000255542 SLC1A2 MIR1343
GH11J034903 Enhancer 1 Ensembl ENCODE 10.3 -510.6 -510556 9 JUND FOS ZNF510 ZBTB25 TEAD1 FOXA2 KMT2B TCF12 ZNF316 CEBPB APIP PDHX MIR1343 ENSG00000255542 SLC1A2 EHF piR-48393-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255542 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000255542 Gene

Genomic Locations for ENSG00000255542 Gene
chr11:35,419,057-35,421,002
(GRCh38/hg38)
Size:
1,946 bases
Orientation:
Plus strand
chr11:35,440,604-35,442,549
(GRCh37/hg19)
Size:
1,946 bases
Orientation:
Plus strand

Genomic View for ENSG00000255542 Gene

Genes around ENSG00000255542 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000255542 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255542 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255542 Gene

Proteins for ENSG00000255542 Gene

Post-translational modifications for ENSG00000255542 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255542 Gene

Domains & Families for ENSG00000255542 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255542 Gene

Function for ENSG00000255542 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255542 Gene

Localization for ENSG00000255542 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255542 Gene

Pathways & Interactions for ENSG00000255542 Gene

PathCards logo

SuperPathways for ENSG00000255542 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000255542 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255542 Gene

Drugs & Compounds for ENSG00000255542 Gene

No Compound Related Data Available

Transcripts for ENSG00000255542 Gene

mRNA/cDNA for ENSG00000255542 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255542 Gene

No ASD Table

Relevant External Links for ENSG00000255542 Gene

GeneLoc Exon Structure for
ENSG00000255542

Expression for ENSG00000255542 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255542 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000255542 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.7), Brain - Nucleus accumbens (basal ganglia) (x5.6), Brain - Caudate (basal ganglia) (x5.6), Brain - Amygdala (x5.1), and Brain - Hippocampus (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000255542: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255542 Gene

Orthologs for ENSG00000255542 Gene

Evolution for ENSG00000255542 Gene

ENSEMBL:
Gene Tree for ENSG00000255542 (if available)
TreeFam:
Gene Tree for ENSG00000255542 (if available)

No data available for Orthologs for ENSG00000255542 Gene

Paralogs for ENSG00000255542 Gene

No data available for Paralogs for ENSG00000255542 Gene

Variants for ENSG00000255542 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255542 Gene

Disorders for ENSG00000255542 Gene

No disorders were found for ENSG00000255542 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000255542 Gene

Publications for ENSG00000255542 Gene

No publications were found for ENSG00000255542 Gene.

No data available for Mastermind for ENSG00000255542 Gene

Products for ENSG00000255542 Gene

Sources for ENSG00000255542 Gene