ENSG00000255520 Gene (RNA Gene)

 

GC11M061113
GIFtS:
7
See more...

Aliases for ENSG00000255520 Gene

Subcategory (RNA class) for ENSG00000255520 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000255520 Gene

  • Novel Transcript 5
  • NONHSAG008222.2 91
  • HSALNG0084018 164
  • Lnc-ARFGAP2-1 165
  • AC090589.2 5

External Ids for ENSG00000255520 Gene

Previous GeneCards Identifiers for ENSG00000255520 Gene

  • GC11M047144
  • GC11M047243
  • GC11M047936
  • GC11M055802
  • GC11M056021
  • GC11M056166
  • GC11M059682
  • GC11M050789
  • GC11M051584
  • GC11M052246
  • GC11M052906
  • GC11M053574
  • GC11M054240
  • GC11M054906
  • GC11M055605

Summaries for ENSG00000255520 Gene

GeneCards Summary for ENSG00000255520 Gene

ENSG00000255520 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000255520 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000255520 Gene

Genomics for ENSG00000255520 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000255520 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J047130 Enhancer 0.9 Ensembl ENCODE 600.7 +0.0 1 1.2 SOX6 EED CTBP1 RUNX3 USF1 EHMT2 POLR2A JUNB IRF4 BATF ENSG00000255520 lnc-ARFGAP2-2 LRP4 PACSIN3 ARFGAP2 C11orf49
GH11J047132 Enhancer 0.3 Ensembl ENCODE 600.7 -1.9 -1883 0.2 ENSG00000255520 LOC107984329 ARFGAP2 C11orf49
GH11J047996 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.6 -878.1 -878081 24.6 SP1 GATAD2A PRDM10 ZNF629 REST TFE3 KDM1A POLR2A ZNF7 BACH1 ENSG00000200090 PTPRJ FNBP4 NUP160 MADD ENSG00000270060 DDB2 MYBPC3 CELF1 ACP2
GH11J048062 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 3.7 -933.1 -933115 2.8 REST ZNF24 SP1 SCRT2 JUND CEBPB FOS ZKSCAN1 NR2F2 EP300 PTPRJ ENSG00000255520 RF00017-918 piR-39281 OR4B1
GH11J048037 Enhancer 0.5 dbSUPER 3.8 -907.4 -907353 1 SCRT2 ZNF580 PRDM4 ZNF664 SPI1 PACSIN3 ENSG00000255520 piR-39281 RF00017-918 PTPRJ OR4B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255520 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000255520 Gene

Genomic Locations for ENSG00000255520 Gene
chr11:47,123,104-47,130,802
(GRCh38/hg38)
Size:
7,699 bases
Orientation:
Minus strand
chr11:47,144,655-47,152,352
(GRCh37/hg19)
Size:
7,698 bases
Orientation:
Minus strand

Genomic View for ENSG00000255520 Gene

Genes around ENSG00000255520 on UCSC Golden Path with GeneCards custom track
ENSG00000255520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000255520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255520 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000255520 Gene

Proteins for ENSG00000255520 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000255520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255520 Gene

Domains & Families for ENSG00000255520 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255520 Gene

Function for ENSG00000255520 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000255520 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255520 Gene

Localization for ENSG00000255520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255520 Gene

Pathways & Interactions for ENSG00000255520 Gene

PathCards logo

SuperPathways for ENSG00000255520 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000255520 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255520 Gene

Drugs & Compounds for ENSG00000255520 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000255520 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000255520 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000006FD2C_9606 lncRNA 332 4

Ensembl: ENST00000532022 (view in UCSC) ,

LncBook: HSALNT0175009,

LNCipedia: lnc-ARFGAP2-1:1,

NONCODE: NONHSAT021211.2,

URS00009C46BA_9606 lncRNA 332 2

LncBook: HSALNT0175010,

NONCODE: NONHSAT160318.1,

ENSG00000255520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255520 Gene

No ASD Table

Relevant External Links for ENSG00000255520 Gene

GeneLoc Exon Structure for
ENSG00000255520

No data available for mRNA/cDNA for ENSG00000255520 Gene

Expression for ENSG00000255520 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255520 Gene

mRNA expression in normal human tissues for ENSG00000255520 Gene
mRNA expression by GTEx for ENSG00000255520 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000255520 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.5) and Brain - Cerebellum (x6.3).
genes like me logo Genes that share expression patterns with ENSG00000255520: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255520 Gene

Orthologs for ENSG00000255520 Gene

Evolution for ENSG00000255520 Gene

ENSEMBL:
Gene Tree for ENSG00000255520 (if available)
TreeFam:
Gene Tree for ENSG00000255520 (if available)

No data available for Orthologs for ENSG00000255520 Gene

Paralogs for ENSG00000255520 Gene

No data available for Paralogs for ENSG00000255520 Gene

Variants for ENSG00000255520 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255520 Gene

Disorders for ENSG00000255520 Gene

No disorders were found for ENSG00000255520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000255520 Gene

Publications for ENSG00000255520 Gene

No publications were found for ENSG00000255520 Gene.

No data available for Mastermind for ENSG00000255520 Gene

Products for ENSG00000255520 Gene

Sources for ENSG00000255520 Gene