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Aliases for ENSG00000255330 Gene

Aliases for ENSG00000255330 Gene

  • Protein SOGA3 5
  • AL096711.2 5
  • C6orf174 4

External Ids for ENSG00000255330 Gene

Previous GeneCards Identifiers for ENSG00000255330 Gene

  • GC06M127759

Summaries for ENSG00000255330 Gene

GeneCards Summary for ENSG00000255330 Gene

ENSG00000255330 is a Protein Coding gene. An important paralog of this gene is SOGA3.

Additional gene information for ENSG00000255330 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000255330 Gene

Genomics for ENSG00000255330 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000255330 Gene

Promoters and enhancers for ENSG00000255330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J127518 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 650.7 -0.1 -67 1.5 KLF17 SIN3A ZNF2 ZNF335 ZSCAN5C RCOR1 EGR2 SP3 USF2 ELF1 SOGA3 ENSG00000255330 C6orf58 KIAA0408
GH06J127481 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 +35.7 35687 4 FOXA2 SIN3A BATF ETS1 ZEB1 ZNF366 ATF7 FOS JUNB CEBPB C6orf58 KIAA0408 SOGA3 ENSG00000255330 ECHDC1 PIR32248
GH06J127514 Enhancer 1.1 Ensembl ENCODE 0.7 +3.2 3200 2.8 PKNOX1 SIN3A ZNF2 ZNF48 YY1 SLC30A9 GLIS2 ZNF143 KLF7 ZNF202 KIAA0408 ENSG00000255330 SOGA3 PIR32248
GH06J127456 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.2 +60.9 60871 4.1 ATF1 FOXA2 MAX MZF1 SIN3A CEBPG YY1 ZNF316 EGR1 PRDM10 KIAA0408 ECHDC1 GC06P127437 ENSG00000255330 SOGA3
GH06J127463 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +54.6 54642 2.6 CTCF CLOCK SIN3A IRF4 RAD21 GATA3 ZNF143 SMC3 BCLAF1 RFX1 ECHDC1 KIAA0408 GC06P127475 ENSG00000255330 SOGA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000255330 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000255330 Gene

Genomic Locations for ENSG00000255330 Gene
chr6:127,438,406-127,519,001
(GRCh38/hg38)
Size:
80,596 bases
Orientation:
Minus strand

Genomic View for ENSG00000255330 Gene

Genes around ENSG00000255330 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000255330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255330 Gene

Proteins for ENSG00000255330 Gene

  • Protein details for ENSG00000255330 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TF21-SOGA3_HUMAN
    Recommended name:
    Protein SOGA3
    Protein Accession:
    Q5TF21

    Protein attributes for ENSG00000255330 Gene

    Size:
    947 amino acids
    Molecular mass:
    103199 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ENSG00000255330 Gene

Post-translational modifications for ENSG00000255330 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ENSG00000255330 Gene

No data available for DME Specific Peptides for ENSG00000255330 Gene

Domains & Families for ENSG00000255330 Gene

Protein Domains for ENSG00000255330 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5TF21

UniProtKB/Swiss-Prot:

SOGA3_HUMAN :
  • Belongs to the SOGA family.
Family:
  • Belongs to the SOGA family.
genes like me logo Genes that share domains with ENSG00000255330: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for ENSG00000255330 Gene

Function for ENSG00000255330 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255330 Gene

Localization for ENSG00000255330 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ENSG00000255330 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for ENSG00000255330 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ENSG00000255330: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ENSG00000255330 Gene

Pathways & Interactions for ENSG00000255330 Gene

SuperPathways for ENSG00000255330 Gene

No Data Available

Interacting Proteins for ENSG00000255330 Gene

Gene Ontology (GO) - Biological Process for ENSG00000255330 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010506 regulation of autophagy IEA --
genes like me logo Genes that share ontologies with ENSG00000255330: view

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000255330 Gene

Drugs & Compounds for ENSG00000255330 Gene

No Compound Related Data Available

Transcripts for ENSG00000255330 Gene

mRNA/cDNA for ENSG00000255330 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255330 Gene

No ASD Table

Relevant External Links for ENSG00000255330 Gene

GeneLoc Exon Structure for
ENSG00000255330

Expression for ENSG00000255330 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255330 Gene

Orthologs for ENSG00000255330 Gene

This gene was present in the common ancestor of animals.

Orthologs for ENSG00000255330 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 93 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Soga3 34
  • 91 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 89 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 34
  • 86 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 88 (a)
ManyToMany
-- 34
  • 80 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii soga3a 34
  • 64 (a)
ManyToMany
soga3b 34
  • 61 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG18304 34
  • 8 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tag-241 34
  • 7 (a)
OneToMany
Species where no ortholog for ENSG00000255330 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ENSG00000255330 Gene

ENSEMBL:
Gene Tree for ENSG00000255330 (if available)
TreeFam:
Gene Tree for ENSG00000255330 (if available)

Paralogs for ENSG00000255330 Gene

Paralogs for ENSG00000255330 Gene

genes like me logo Genes that share paralogs with ENSG00000255330: view

Variants for ENSG00000255330 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255330 Gene

Disorders for ENSG00000255330 Gene

No disorders were found for ENSG00000255330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000255330 Gene

Publications for ENSG00000255330 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4 58

Products for ENSG00000255330 Gene

Sources for ENSG00000255330 Gene

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