Aliases for ENSG00000255260 Gene

Subcategory (RNA class) for ENSG00000255260 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000255260 Gene

  • Novel Transcript 5
  • NONHSAG007661.2 91
  • Lnc-GALNT18-1 165
  • HSALNG0082684 164
  • KC877392.1 5

External Ids for ENSG00000255260 Gene

Summaries for ENSG00000255260 Gene

GeneCards Summary for ENSG00000255260 Gene

ENSG00000255260 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000255260 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000255260 Gene

Genomics for ENSG00000255260 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000255260 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J011242 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 610.6 +0.9 857 2.8 RFX1 PKNOX1 SP1 KLF9 POLR2A NR2F2 BMI1 NR2F1 EBF1 RXRA ENSG00000255260 MTND5P21 lnc-CTR9-8 CSNK2A3 ZBED5
GH11J011245 Enhancer 0.2 ENCODE 600.7 -0.8 -767 0.2 ENSG00000255260 piR-50444-055 CSNK2A3 ZBED5
GH11J011267 Enhancer 0.6 Ensembl 16 -20.9 -20939 0.4 CTCF ZNF143 TRIM22 RUNX3 CTBP1 ZNF444 MAZ VEZF1 FOS XRCC5 ENSG00000255260 piR-50444-055 CSNK2A3 ZBED5
GH11J011279 Enhancer 0.5 Ensembl ENCODE 10.8 -35.9 -35938 2.4 ZIC2 FOXP1 ENSG00000255260 CSNK2A3 ENSG00000255351 piR-50444-055 GALNT18 ZBED5
GH11J011290 Enhancer 0.6 Ensembl 7.7 -46.1 -46139 2 ZIC2 SP1 FOXA2 HHEX NR2F2 SMAD4 BCL6 HNF4A RXRA RARA ENSG00000255260 piR-50444-055 CSNK2A3 GALNT18 ZBED5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255260 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000255260 Gene

Genomic Locations for ENSG00000255260 Gene
chr11:11,242,750-11,244,862
(GRCh38/hg38)
Size:
2,113 bases
Orientation:
Minus strand
chr11:11,264,735-11,265,262
(GRCh37/hg19)
Size:
528 bases
Orientation:
Minus strand

Genomic View for ENSG00000255260 Gene

Genes around ENSG00000255260 on UCSC Golden Path with GeneCards custom track
ENSG00000255260 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000255260 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255260 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255260 Gene

Proteins for ENSG00000255260 Gene

Post-translational modifications for ENSG00000255260 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255260 Gene

Domains & Families for ENSG00000255260 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255260 Gene

Function for ENSG00000255260 Gene

Phenotypes From GWAS Catalog for ENSG00000255260 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255260 Gene

Localization for ENSG00000255260 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255260 Gene

Pathways & Interactions for ENSG00000255260 Gene

PathCards logo

SuperPathways for ENSG00000255260 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000255260 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255260 Gene

Drugs & Compounds for ENSG00000255260 Gene

No Compound Related Data Available

Transcripts for ENSG00000255260 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000255260 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000048C0F1_9606 lncRNA 426 4

Ensembl: ENST00000524855 (view in UCSC) ,

LncBook: HSALNT0172108,

LNCipedia: lnc-GALNT18-1:2,

NONCODE: NONHSAT018020.2,

URS00008B2799_9606 lncRNA 943 3

LncBook: HSALNT0172107,

LNCipedia: lnc-GALNT18-1:1,

NONCODE: NONHSAT018019.2,

URS00009B2795_9606 lncRNA 532 2

LncBook: HSALNT0172109,

NONCODE: NONHSAT160077.1,

ENSG00000255260 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255260 Gene

No ASD Table

Relevant External Links for ENSG00000255260 Gene

GeneLoc Exon Structure for
ENSG00000255260

No data available for mRNA/cDNA for ENSG00000255260 Gene

Expression for ENSG00000255260 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255260 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000255260 Gene

This gene is overexpressed in Testis (x8.8), Brain - Cerebellar Hemisphere (x5.1), Lung (x4.8), and Brain - Cerebellum (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000255260: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255260 Gene

Orthologs for ENSG00000255260 Gene

Evolution for ENSG00000255260 Gene

ENSEMBL:
Gene Tree for ENSG00000255260 (if available)
TreeFam:
Gene Tree for ENSG00000255260 (if available)

No data available for Orthologs for ENSG00000255260 Gene

Paralogs for ENSG00000255260 Gene

No data available for Paralogs for ENSG00000255260 Gene

Variants for ENSG00000255260 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255260 Gene

Disorders for ENSG00000255260 Gene

Additional Disease Information for ENSG00000255260

No disorders were found for ENSG00000255260 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000255260 Gene

Publications for ENSG00000255260 Gene

No publications were found for ENSG00000255260 Gene.

No data available for Mastermind for ENSG00000255260 Gene

Products for ENSG00000255260 Gene

Sources for ENSG00000255260 Gene