Aliases for ENSG00000255234 Gene

Subcategory (RNA class) for ENSG00000255234 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000255234 Gene

  • Novel Transcript, Antisense To CCDC90B 5
  • NONHSAG009237.2 91
  • Lnc-ANKRD42-2 165
  • HSALNG0086140 164
  • AP000446.1 5

External Ids for ENSG00000255234 Gene

Previous GeneCards Identifiers for ENSG00000255234 Gene

  • GC11P082997

Summaries for ENSG00000255234 Gene

GeneCards Summary for ENSG00000255234 Gene

ENSG00000255234 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000255234 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ENSG00000255234 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000255234 Gene

Genomics for ENSG00000255234 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000255234 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J083284 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 612.4 -0.4 -373 3.4 CEBPG HNRNPL CREB1 GATAD2A ATF7 TEAD4 ZNF629 REST SIX5 IKZF1 CCDC90B ENSG00000255234 lnc-DLG2-3 PCF11 ENSG00000254676 lnc-DLG2-2 ANKRD42
GH11J083256 Enhancer 1 Ensembl ENCODE 23.8 -28.9 -28919 3.6 GATAD2A RCOR2 ZNF7 RXRB IRF2 SP1 CEBPA SOX13 ETS1 TCF7 MN297094 CCDC90B ENSG00000255234 RAB30 RAB30-DT lnc-CCDC90B-3 ANKRD42
GH11J083566 Enhancer 1 FANTOM5 Ensembl ENCODE 9.3 +281.3 281281 1.6 JUND CEBPB BRCA1 FOS JUN GTF2F1 EP300 RAD21 RFX5 SMC3 ENSG00000255234 CCDC90B piR-39777-001 LOC107984425
GH11J082867 Enhancer 0.8 ENCODE dbSUPER 10.3 -418.6 -418609 0.8 CTCF PRDM10 FOXA1 REST RAD21 TRIM22 ZXDB ZNF444 SMC3 GATA3 DDIAS PRCP FAM181B CCDC90B ENSG00000255234 RAB30 lnc-RAB30-5 lnc-FAM181B-5
GH11J083249 Enhancer 0.7 FANTOM5 Ensembl 12.1 -36.0 -36033 0.6 CTCF REST RAD21 TRIM22 SMC3 ZNF654 lnc-CCDC90B-4 ENSG00000255234 PRCP DDIAS RAB30 RAB30-DT lnc-CCDC90B-3 CCDC90B ANKRD42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000255234 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000255234 Gene

Genomic Locations for ENSG00000255234 Gene
chr11:83,286,120-83,423,516
(GRCh38/hg38)
Size:
137,397 bases
Orientation:
Plus strand
chr11:82,997,171-83,134,559
(GRCh37/hg19)
Size:
137,389 bases
Orientation:
Plus strand

Genomic View for ENSG00000255234 Gene

Genes around ENSG00000255234 on UCSC Golden Path with GeneCards custom track
ENSG00000255234 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000255234 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000255234 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000255234 Gene

Proteins for ENSG00000255234 Gene

Post-translational modifications for ENSG00000255234 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000255234 Gene

Domains & Families for ENSG00000255234 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000255234 Gene

Function for ENSG00000255234 Gene

Phenotypes From GWAS Catalog for ENSG00000255234 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000255234 Gene

Localization for ENSG00000255234 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000255234 Gene

Pathways & Interactions for ENSG00000255234 Gene

PathCards logo

SuperPathways for ENSG00000255234 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000255234 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000255234 Gene

Drugs & Compounds for ENSG00000255234 Gene

No Compound Related Data Available

Transcripts for ENSG00000255234 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000255234 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005AA8AD_9606 lncRNA 453 4

Ensembl: ENST00000534572 (view in UCSC) ,

LncBook: HSALNT0179201,

LNCipedia: lnc-ANKRD42-2:2,

NONCODE: NONHSAT023409.2,

URS00002F4C40_9606 lncRNA 2643 2

Ensembl: ENST00000530045 (view in UCSC) ,

NONCODE: NONHSAT023408.2,

URS0000EF48DF_9606 lncRNA 2500 1

Ensembl: ENST00000671128 (view in UCSC) ,

URS0000D59E59_9606 lncRNA 22162 1

LNCipedia: lnc-ANKRD42-2:9,

URS0000D5BDD2_9606 lncRNA 333 1

LNCipedia: lnc-ANKRD42-2:8,

ENSG00000255234 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000255234 Gene

No ASD Table

Relevant External Links for ENSG00000255234 Gene

GeneLoc Exon Structure for
ENSG00000255234

No data available for mRNA/cDNA for ENSG00000255234 Gene

Expression for ENSG00000255234 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000255234 Gene

mRNA expression in normal human tissues for ENSG00000255234 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000255234 Gene

This gene is overexpressed in Testis (x6.8) and Pancreas (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000255234: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000255234 Gene

Orthologs for ENSG00000255234 Gene

Evolution for ENSG00000255234 Gene

ENSEMBL:
Gene Tree for ENSG00000255234 (if available)
TreeFam:
Gene Tree for ENSG00000255234 (if available)

No data available for Orthologs for ENSG00000255234 Gene

Paralogs for ENSG00000255234 Gene

No data available for Paralogs for ENSG00000255234 Gene

Variants for ENSG00000255234 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000255234 Gene

Disorders for ENSG00000255234 Gene

Additional Disease Information for ENSG00000255234

No disorders were found for ENSG00000255234 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000255234 Gene

Publications for ENSG00000255234 Gene

No publications were found for ENSG00000255234 Gene.

No data available for Mastermind for ENSG00000255234 Gene

Products for ENSG00000255234 Gene

Sources for ENSG00000255234 Gene