Aliases for ENSG00000254991 Gene

Subcategory (RNA class) for ENSG00000254991 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000254991 Gene

  • Novel Transcript 5
  • NONHSAG007674.2 91
  • HSALNG0082710 164
  • Lnc-MICAL2-2 165
  • AC124276.1 5

External Ids for ENSG00000254991 Gene

Previous GeneCards Identifiers for ENSG00000254991 Gene

  • GC11P012089

Summaries for ENSG00000254991 Gene

GeneCards Summary for ENSG00000254991 Gene

ENSG00000254991 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254991 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254991 Gene

Genomics for ENSG00000254991 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254991 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012063 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 613.4 +0.9 872 8 CEBPG CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 IKZF1 JUND ZIC2 ENSG00000254991 MICAL2 MICALCL ENSG00000255400 lnc-DKK3-9 DKK3
GH11J012061 Enhancer 0.5 Ensembl dbSUPER 8.8 -4.5 -4487 1.1 PRDM4 ZMYM3 RF00017-865 MICALCL ENSG00000254991 piR-32539-004 MICAL2 DKK3
GH11J012060 Enhancer 0.2 dbSUPER 6.9 -6.1 -6101 0.6 MICALCL MICAL2 ENSG00000254680 ENSG00000254991 RF00017-865 piR-32539-004 LINC02547 DKK3
GH11J012073 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +10.4 10357 7.3 CREB1 RFX1 REST MNT CEBPB ETS1 SP1 JUND BRCA1 ATF3 ENSG00000255400 MICAL2 MICALCL PARVA DKK3 lnc-DKK3-9 ENSG00000254991
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254991 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254991 Gene

Genomic Locations for ENSG00000254991 Gene
chr11:12,066,929-12,073,014
(GRCh38/hg38)
Size:
6,086 bases
Orientation:
Plus strand
chr11:12,088,476-12,094,561
(GRCh37/hg19)
Size:
6,086 bases
Orientation:
Plus strand

Genomic View for ENSG00000254991 Gene

Genes around ENSG00000254991 on UCSC Golden Path with GeneCards custom track
ENSG00000254991 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254991 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254991 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254991 Gene

Proteins for ENSG00000254991 Gene

Post-translational modifications for ENSG00000254991 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254991 Gene

Domains & Families for ENSG00000254991 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254991 Gene

Function for ENSG00000254991 Gene

Phenotypes From GWAS Catalog for ENSG00000254991 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254991 Gene

Localization for ENSG00000254991 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254991 Gene

Pathways & Interactions for ENSG00000254991 Gene

PathCards logo

SuperPathways for ENSG00000254991 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254991 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254991 Gene

Drugs & Compounds for ENSG00000254991 Gene

No Compound Related Data Available

Transcripts for ENSG00000254991 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254991 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000431C8D_9606 lncRNA 899 4

Ensembl: ENST00000476130 (view in UCSC) ,

LncBook: HSALNT0172181,

LNCipedia: lnc-MICAL2-2:1,

NONCODE: NONHSAT018036.2,

URS00008B97CA_9606 lncRNA 716 1

LNCipedia: lnc-MICAL2-2:2,

ENSG00000254991 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254991 Gene

No ASD Table

Relevant External Links for ENSG00000254991 Gene

GeneLoc Exon Structure for
ENSG00000254991

No data available for mRNA/cDNA for ENSG00000254991 Gene

Expression for ENSG00000254991 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254991 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254991 Gene

This gene is overexpressed in Testis (x8.5), Skin - Sun Exposed (Lower leg) (x7.5), Skin - Not Sun Exposed (Suprapubic) (x6.2), and Muscle - Skeletal (x5.7).
genes like me logo Genes that share expression patterns with ENSG00000254991: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254991 Gene

Orthologs for ENSG00000254991 Gene

Evolution for ENSG00000254991 Gene

ENSEMBL:
Gene Tree for ENSG00000254991 (if available)
TreeFam:
Gene Tree for ENSG00000254991 (if available)

No data available for Orthologs for ENSG00000254991 Gene

Paralogs for ENSG00000254991 Gene

No data available for Paralogs for ENSG00000254991 Gene

Variants for ENSG00000254991 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254991 Gene

Disorders for ENSG00000254991 Gene

No disorders were found for ENSG00000254991 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254991 Gene

Publications for ENSG00000254991 Gene

No publications were found for ENSG00000254991 Gene.

No data available for Mastermind for ENSG00000254991 Gene

Products for ENSG00000254991 Gene

Sources for ENSG00000254991 Gene