Aliases for ENSG00000254943 Gene

Subcategory (RNA class) for ENSG00000254943 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for ENSG00000254943 Gene

  • Novel Transcript, Antisense To ROBO4 5
  • HSALNG0087923 169
  • AP003501.2 5

External Ids for ENSG00000254943 Gene

Previous GeneCards Identifiers for ENSG00000254943 Gene

  • GC11P124761

Summaries for ENSG00000254943 Gene

GeneCards Summary for ENSG00000254943 Gene

ENSG00000254943 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254943 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254943 Gene

Genomics for ENSG00000254943 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254943 Gene

Promoters and enhancers for ENSG00000254943 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J124891 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 750.6 +0.4 397 0.2 CTCF ENSG00000254943 ROBO4 lnc-HEPACAM-1
GH11J124893 Enhancer 0.6 ENCODE dbSUPER 750.6 +1.9 1876 0.2 ZKSCAN1 NR2F2 RAD21 ENSG00000254943 lnc-HEPACAM-1 ROBO4
GH11J125110 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.5 +220.2 220206 2.2 SP1 ZBTB40 RBPJ ATF1 FOS CREB1 HCFC1 NFYC ELF1 HLF TMEM218 KRT18P59 lnc-TMEM218-1 DDX25 ENSG00000255475 PKNOX2 PKNOX2-AS1 SLC37A2 FEZ1 CCDC15
GH11J124942 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +52.2 52187 2.2 MLX RBPJ HLF SP5 RXRB RCOR2 SOX13 TCF7 ZBTB26 ZKSCAN8 HSALNG0087928 HEPACAM ENSG00000254943 ROBO3 HEPN1 PKNOX2 piR-56883-041
GH11J124844 Enhancer 0.4 ENCODE 10.2 -48.0 -48044 0.2 EZH2 POLR2A L3MBTL2 ROBO3 SIAE SPA17 ENSG00000254943 NRGN ROBO4 piR-57133-096 ENSG00000254941 lnc-MSANTD2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254943 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254943 Gene

Genomic Locations for ENSG00000254943 Gene
chr11:124,891,304-124,892,126
(GRCh38/hg38)
Size:
823 bases
Orientation:
Plus strand
chr11:124,761,200-124,762,022
(GRCh37/hg19)
Size:
823 bases
Orientation:
Plus strand

Genomic View for ENSG00000254943 Gene

Genes around ENSG00000254943 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254943 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254943 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254943 Gene

Proteins for ENSG00000254943 Gene

Post-translational modifications for ENSG00000254943 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254943 Gene

Domains & Families for ENSG00000254943 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254943 Gene

Function for ENSG00000254943 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254943 Gene

Localization for ENSG00000254943 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254943 Gene

Pathways & Interactions for ENSG00000254943 Gene

PathCards logo

SuperPathways for ENSG00000254943 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254943 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000254943 Gene

Drugs & Compounds for ENSG00000254943 Gene

No Compound Related Data Available

Transcripts for ENSG00000254943 Gene

mRNA/cDNA for ENSG00000254943 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254943 Gene

No ASD Table

Relevant External Links for ENSG00000254943 Gene

GeneLoc Exon Structure for
ENSG00000254943

Expression for ENSG00000254943 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000254943 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254943 Gene

This gene is overexpressed in Spleen (x4.6) and Lung (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000254943: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254943 Gene

Orthologs for ENSG00000254943 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000254943 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 33
  • 100 (a)
OneToOne
Species where no ortholog for ENSG00000254943 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000254943 Gene

ENSEMBL:
Gene Tree for ENSG00000254943 (if available)
TreeFam:
Gene Tree for ENSG00000254943 (if available)

Paralogs for ENSG00000254943 Gene

No data available for Paralogs for ENSG00000254943 Gene

Variants for ENSG00000254943 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254943 Gene

Disorders for ENSG00000254943 Gene

No disorders were found for ENSG00000254943 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254943 Gene

Publications for ENSG00000254943 Gene

No publications were found for ENSG00000254943 Gene.

No data available for External Links for ENSG00000254943 Gene

Products for ENSG00000254943 Gene

Sources for ENSG00000254943 Gene