Aliases for ENSG00000254710 Gene

Subcategory (RNA class) for ENSG00000254710 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000254710 Gene

  • Novel Transcript 5
  • NONHSAG009900.2 91
  • Lnc-GRAMD1B-7 165
  • HSALNG0087812 164
  • AP001970.1 5

External Ids for ENSG00000254710 Gene

Previous GeneCards Identifiers for ENSG00000254710 Gene

  • GC11P123059

Summaries for ENSG00000254710 Gene

GeneCards Summary for ENSG00000254710 Gene

ENSG00000254710 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254710 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254710 Gene

Genomics for ENSG00000254710 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254710 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J123184 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.9 -867 7.1 PRDM10 FOXA1 POLR2A ZNF561 SCRT2 JUND ZNF10 CEBPB OSR2 BCL11A ENSG00000254710 CLMP RF00017-1056 HSPA8
GH11J123228 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +43.1 43060 8.9 CTCF KDM1A ZNF300 ZNF776 POLR2A ZNF37A PKNOX1 CEBPA ZNF561 SCRT2 ZNF202 CLMP ATP5PBP5 ENSG00000254710 RF00017-1058 lnc-CLMP-1 GRAMD1B
GH11J123211 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.1 +23.7 23687 3 ZNF629 ZNF692 ZIC2 PATZ1 ZNF600 ZNF561 SCRT2 ZNF792 ARNT ZBTB44 lnc-CLMP-1 ENSG00000254710 CLMP RF00017-1058 GRAMD1B
GH11J123144 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.3 -42.8 -42842 2.9 CREB1 ZNF7 ZFX SP1 JUND CEBPB ESR1 NR3C1 JUN FOS piR-50443-067 ENSG00000254710 CLMP RF00017-1056 HSPA8
GH11J123477 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.8 +291.2 291171 4 CTCF FOXA1 ZNF143 REST RAD21 TCF12 IKZF2 TRIM22 ELF4 GABPA CLMP GRAMD1B ENSG00000254710 OR8D4 OR6M1 lnc-OR8D4-1 MN309418 SCN3B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254710 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254710 Gene

Genomic Locations for ENSG00000254710 Gene
chr11:123,188,802-123,228,502
(GRCh38/hg38)
Size:
39,701 bases
Orientation:
Plus strand
chr11:123,059,510-123,098,985
(GRCh37/hg19)
Size:
39,476 bases
Orientation:
Plus strand

Genomic View for ENSG00000254710 Gene

Genes around ENSG00000254710 on UCSC Golden Path with GeneCards custom track
ENSG00000254710 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254710 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254710 Gene

Proteins for ENSG00000254710 Gene

Post-translational modifications for ENSG00000254710 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254710 Gene

Domains & Families for ENSG00000254710 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254710 Gene

Function for ENSG00000254710 Gene

Phenotypes From GWAS Catalog for ENSG00000254710 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254710 Gene

Localization for ENSG00000254710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254710 Gene

Pathways & Interactions for ENSG00000254710 Gene

PathCards logo

SuperPathways for ENSG00000254710 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254710 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254710 Gene

Drugs & Compounds for ENSG00000254710 Gene

No Compound Related Data Available

Transcripts for ENSG00000254710 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254710 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEC96E_9606 lncRNA 926 1

Ensembl: ENST00000531681 (view in UCSC) ,

URS000049D682_9606 lncRNA 701 3

LncBook: HSALNT0182584,

LNCipedia: lnc-GRAMD1B-7:1,

NONCODE: NONHSAT024841.2,

ENSG00000254710 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254710 Gene

No ASD Table

Relevant External Links for ENSG00000254710 Gene

GeneLoc Exon Structure for
ENSG00000254710

No data available for mRNA/cDNA for ENSG00000254710 Gene

Expression for ENSG00000254710 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254710 Gene

genes like me logo Genes that share expression patterns with ENSG00000254710: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254710 Gene

Orthologs for ENSG00000254710 Gene

Evolution for ENSG00000254710 Gene

ENSEMBL:
Gene Tree for ENSG00000254710 (if available)
TreeFam:
Gene Tree for ENSG00000254710 (if available)

No data available for Orthologs for ENSG00000254710 Gene

Paralogs for ENSG00000254710 Gene

No data available for Paralogs for ENSG00000254710 Gene

Variants for ENSG00000254710 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254710 Gene

Disorders for ENSG00000254710 Gene

Additional Disease Information for ENSG00000254710

No disorders were found for ENSG00000254710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000254710 Gene

Publications for ENSG00000254710 Gene

No publications were found for ENSG00000254710 Gene.

No data available for Mastermind for ENSG00000254710 Gene

Products for ENSG00000254710 Gene

Sources for ENSG00000254710 Gene