ENSG00000254710 Gene (RNA Gene)

 

GC11P123188
GIFtS:
6

Aliases for ENSG00000254710 Gene

Subcategory (RNA class) for ENSG00000254710 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000254710 Gene

  • Novel Transcript 5
  • Lnc-GRAMD1B-7 168
  • HSALNG0087812 167
  • NONHSAG009900 92
  • AP001970.1 5

External Ids for ENSG00000254710 Gene

Previous GeneCards Identifiers for ENSG00000254710 Gene

  • GC11P123059

Summaries for ENSG00000254710 Gene

GeneCards Summary for ENSG00000254710 Gene

ENSG00000254710 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254710 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254710 Gene

Genomics for ENSG00000254710 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254710 Gene

Promoters and enhancers for ENSG00000254710 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123184 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.9 -867 7.1 EP300 JUND FOS ZNF10 HDAC2 OSR2 CTCF BCL11A NFIC ZNF263 ENSG00000254710 CLMP RF00017-1056
GH11J123228 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +43.1 43060 8.9 EP300 CTCF ZNF300 MYC ZNF662 ZNF491 NR2F2 HDAC2 NFIC ZNF195 ZNF202 CLMP ATP5PBP5 ENSG00000254710 RF00017-1058 lnc-CLMP-1
GH11J123211 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.1 +23.7 23687 3 ZSCAN5C ZNF639 ZNF10 ZIC2 ZNF423 ZNF510 KLF7 ATF2 OSR2 ZBTB17 lnc-CLMP-1 ENSG00000254710 RF00017-1058
GH11J123144 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.3 -42.8 -42842 2.9 TCF12 JUND FOS EP300 CREB1 FOSL2 CEBPB POLR2A JUN NR3C1 piR-50443-067 ENSG00000254710 CLMP RF00017-1056
GH11J123477 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.8 +291.2 291171 4 CTCF EP300 REST MEF2C RAD21 TRIM22 HDAC2 BCL11A TCF12 RELA GRAMD1B ENSG00000254710 CLMP OR8D4 OR6M1 lnc-OR8D4-1 SF3A3P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254710 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254710 Gene

Genomic Locations for ENSG00000254710 Gene
chr11:123,188,802-123,228,502
(GRCh38/hg38)
Size:
39,701 bases
Orientation:
Plus strand
chr11:123,059,510-123,098,985
(GRCh37/hg19)
Size:
39,476 bases
Orientation:
Plus strand

Genomic View for ENSG00000254710 Gene

Genes around ENSG00000254710 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254710 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000254710 Gene

Proteins for ENSG00000254710 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000254710 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254710 Gene

Domains & Families for ENSG00000254710 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254710 Gene

Function for ENSG00000254710 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000254710 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254710 Gene

Localization for ENSG00000254710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254710 Gene

Pathways & Interactions for ENSG00000254710 Gene

PathCards logo

SuperPathways for ENSG00000254710 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000254710 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254710 Gene

Drugs & Compounds for ENSG00000254710 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000254710 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000254710 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254710 Gene

No ASD Table

Relevant External Links for ENSG00000254710 Gene

GeneLoc Exon Structure for
ENSG00000254710

Expression for ENSG00000254710 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254710 Gene

mRNA expression in normal human tissues for ENSG00000254710 Gene
mRNA expression by GTEx for ENSG00000254710 Gene
genes like me logo Genes that share expression patterns with ENSG00000254710: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254710 Gene

Orthologs for ENSG00000254710 Gene

Evolution for ENSG00000254710 Gene

ENSEMBL:
Gene Tree for ENSG00000254710 (if available)
TreeFam:
Gene Tree for ENSG00000254710 (if available)

No data available for Orthologs for ENSG00000254710 Gene

Paralogs for ENSG00000254710 Gene

No data available for Paralogs for ENSG00000254710 Gene

Variants for ENSG00000254710 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254710 Gene

Disorders for ENSG00000254710 Gene

No disorders were found for ENSG00000254710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254710 Gene

Publications for ENSG00000254710 Gene

No publications were found for ENSG00000254710 Gene.

No data available for Mastermind for ENSG00000254710 Gene

Products for ENSG00000254710 Gene

Sources for ENSG00000254710 Gene