Aliases for ENSG00000254688 Gene

Subcategory (RNA class) for ENSG00000254688 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000254688 Gene

  • Novel Transcript 5
  • NONHSAG007692.2 91
  • HSALNG0082743 164
  • Lnc-BTBD10-5 165
  • AC013549.3 5

External Ids for ENSG00000254688 Gene

Previous GeneCards Identifiers for ENSG00000254688 Gene

  • GC11M012843

Summaries for ENSG00000254688 Gene

GeneCards Summary for ENSG00000254688 Gene

ENSG00000254688 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254688 Gene

Genomics for ENSG00000254688 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254688 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012823 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 600.7 -0.7 -724 1.6 HNRNPL GATAD2A SOX13 IKZF1 RCOR2 MTA2 PHF21A RXRB REST DPF2 ENSG00000254688 LOC107984313 HSALNG0082744 TEAD1 RASSF10
GH11J012824 Enhancer 0.2 dbSUPER 600.7 +0.2 238 0.2 ENSG00000254688 lnc-RASSF10-4 TEAD1 RASSF10
GH11J012843 Enhancer 1.6 VISTA ENCODE CraniofacialAtlas dbSUPER 11.9 -22.4 -22448 4.7 GATAD2A ATF7 TFE3 LEF1 SOX13 RCOR2 ZIC2 PKNOX1 POLR2A RXRB ENSG00000254688 TEAD1 ENSG00000252329 ENSG00000255067 hsa-miR-5095-059 RASSF10
GH11J012798 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12.1 +21.0 20970 8.8 CEBPG CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 RFX1 SOX13 IKZF1 TEAD1 ENSG00000254688 ENSG00000252329 lnc-RASSF10-4 RASSF10
GH11J012862 Enhancer 1.4 UCNEbase ENCODE CraniofacialAtlas dbSUPER 11.3 -40.3 -40274 3.5 TEAD4 RFX1 IKZF1 KDM1A POLR2A FOXJ2 RAD21 NFE2 FOXK2 ZNF316 ENSG00000254688 TEAD1 ENSG00000255067 ENSG00000252329 RASSF10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254688 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254688 Gene

Genomic Locations for ENSG00000254688 Gene
chr11:12,822,435-12,823,667
(GRCh38/hg38)
Size:
1,233 bases
Orientation:
Minus strand
chr11:12,843,982-12,845,214
(GRCh37/hg19)
Size:
1,233 bases
Orientation:
Minus strand

Genomic View for ENSG00000254688 Gene

Genes around ENSG00000254688 on UCSC Golden Path with GeneCards custom track
ENSG00000254688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254688 Gene

Proteins for ENSG00000254688 Gene

Post-translational modifications for ENSG00000254688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254688 Gene

Domains & Families for ENSG00000254688 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254688 Gene

Function for ENSG00000254688 Gene

Phenotypes From GWAS Catalog for ENSG00000254688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254688 Gene

Localization for ENSG00000254688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254688 Gene

Pathways & Interactions for ENSG00000254688 Gene

PathCards logo

SuperPathways for ENSG00000254688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254688 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254688 Gene

Drugs & Compounds for ENSG00000254688 Gene

No Compound Related Data Available

Transcripts for ENSG00000254688 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254688 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000013B087_9606 lncRNA 489 4

Ensembl: ENST00000526953 (view in UCSC) ,

LncBook: HSALNT0172243,

LNCipedia: lnc-BTBD10-5:1,

NONCODE: NONHSAT018064.2,

ENSG00000254688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254688 Gene

No ASD Table

Relevant External Links for ENSG00000254688 Gene

GeneLoc Exon Structure for
ENSG00000254688

No data available for mRNA/cDNA for ENSG00000254688 Gene

Expression for ENSG00000254688 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254688 Gene

genes like me logo Genes that share expression patterns with ENSG00000254688: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254688 Gene

Orthologs for ENSG00000254688 Gene

Evolution for ENSG00000254688 Gene

ENSEMBL:
Gene Tree for ENSG00000254688 (if available)
TreeFam:
Gene Tree for ENSG00000254688 (if available)

No data available for Orthologs for ENSG00000254688 Gene

Paralogs for ENSG00000254688 Gene

No data available for Paralogs for ENSG00000254688 Gene

Variants for ENSG00000254688 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254688 Gene

Disorders for ENSG00000254688 Gene

No disorders were found for ENSG00000254688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254688 Gene

Publications for ENSG00000254688 Gene

No publications were found for ENSG00000254688 Gene.

No data available for Mastermind for ENSG00000254688 Gene

Products for ENSG00000254688 Gene

Sources for ENSG00000254688 Gene