Aliases for ENSG00000254686 Gene

Subcategory (RNA class) for ENSG00000254686 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000254686 Gene

  • Novel Transcript 5
  • NONHSAG008060 94
  • Lnc-TRIM44-1 170
  • AL138812.1 5

External Ids for ENSG00000254686 Gene

Summaries for ENSG00000254686 Gene

GeneCards Summary for ENSG00000254686 Gene

ENSG00000254686 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254686 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254686 Gene

Genomics for ENSG00000254686 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254686 Gene

Promoters and enhancers for ENSG00000254686 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J035654 Enhancer 0.3 Ensembl 750.6 -1.6 -1593 1 HNF4A ENSG00000254686 FJX1
GH11J035617 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -35.7 -35650 7.3 CTCF POLR2A HDAC2 L3MBTL2 ZNF121 MNT ZNF148 ZNF384 MAFK SP7 TRAF6 TRIM44 FJX1 PAMR1 ENSG00000254686
GH11J035629 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -26.7 -26693 2.4 ZNF280D SP7 ZSCAN21 KLF14 POLR2A PRDM10 ZNF639 BRCA1 ZEB2 CEBPB TRIM44 FJX1 ENSG00000254686
GH11J035632 Enhancer 0.8 Ensembl 0.3 -24.3 -24293 1.2 SP7 ZSCAN21 PRDM1 CREB1 PKNOX1 ZNF639 ZEB2 PATZ1 ZNF629 ZNF692 TRIM44 FJX1 ENSG00000254686
GH11J035649 Enhancer 0.4 Ensembl 0.4 -6.3 -6293 0.8 ZBTB40 FOS GABPA ENSG00000254686 FJX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254686 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254686 Gene

Genomic Locations for ENSG00000254686 Gene
chr11:35,656,694-35,661,339
(GRCh38/hg38)
Size:
4,646 bases
Orientation:
Plus strand
chr11:35,678,242-35,682,887
(GRCh37/hg19)
Size:
4,646 bases
Orientation:
Plus strand

Genomic View for ENSG00000254686 Gene

Genes around ENSG00000254686 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254686 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254686 Gene

Proteins for ENSG00000254686 Gene

Post-translational modifications for ENSG00000254686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254686 Gene

Domains & Families for ENSG00000254686 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254686 Gene

Function for ENSG00000254686 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254686 Gene

Localization for ENSG00000254686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254686 Gene

Pathways & Interactions for ENSG00000254686 Gene

PathCards logo

SuperPathways for ENSG00000254686 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254686 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000254686 Gene

Drugs & Compounds for ENSG00000254686 Gene

No Compound Related Data Available

Transcripts for ENSG00000254686 Gene

mRNA/cDNA for ENSG00000254686 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254686 Gene

No ASD Table

Relevant External Links for ENSG00000254686 Gene

GeneLoc Exon Structure for
ENSG00000254686

Expression for ENSG00000254686 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000254686 Gene

genes like me logo Genes that share expression patterns with ENSG00000254686: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254686 Gene

Orthologs for ENSG00000254686 Gene

Evolution for ENSG00000254686 Gene

ENSEMBL:
Gene Tree for ENSG00000254686 (if available)
TreeFam:
Gene Tree for ENSG00000254686 (if available)

No data available for Orthologs for ENSG00000254686 Gene

Paralogs for ENSG00000254686 Gene

No data available for Paralogs for ENSG00000254686 Gene

Variants for ENSG00000254686 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254686 Gene

Disorders for ENSG00000254686 Gene

No disorders were found for ENSG00000254686 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254686 Gene

Publications for ENSG00000254686 Gene

No publications were found for ENSG00000254686 Gene.

No data available for External Links for ENSG00000254686 Gene

Products for ENSG00000254686 Gene

Sources for ENSG00000254686 Gene