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Aliases for ENSG00000254680 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000254680 Gene

  • Novel Transcript 5
  • AC079329.1 5

External Ids for ENSG00000254680 Gene

Summaries for ENSG00000254680 Gene

GeneCards Summary for ENSG00000254680 Gene

ENSG00000254680 is an RNA Gene.

Additional gene information for ENSG00000254680 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000254680 Gene

Genomics for ENSG00000254680 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254680 Gene

Promoters and enhancers for ENSG00000254680 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012262 Enhancer 1 ENCODE dbSUPER 600.7 -0.4 -364 1.6 ZKSCAN8 CBFA2T2 TRIM24 SMARCA4 GMEB1 DPF2 ATF1 RFX1 ZNF24 NR2C1 ENSG00000254680 MICAL2 MICALCL ENSG00000254983 GC11M012237
GH11J012083 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 +175.0 175026 9.2 CC2D1A CTCF CEBPG SP1 MTA1 POLR2A RXRA ARID2 IKZF1 RFX1 ENSG00000255400 MICAL2 ENSG00000254680 MICALCL PARVA
GH11J012283 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -23.5 -23518 5.7 CC2D1A CTCF ZSCAN21 MAFK SP7 RAD21 POLR2A IKZF1 REST ZSCAN4 MICAL2 MICALCL ENSG00000254680 PARVA TEAD1 DKK3 ENSG00000254983 GC11M012237
GH11J012218 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 11.2 +41.0 41022 7.4 ELF3 ZNF687 SP1 PPARG SP5 CREM ZNF644 HMG20B RXRA ZIC2 MICALCL MICAL2 ENSG00000254680 GC11P012216
GH11J012239 Enhancer 1 Ensembl ENCODE dbSUPER 12.2 +21.0 20992 5.9 SP1 RXRA ZBTB33 FOXA2 JUND USF1 NFIC GATA3 RAD21 ZBTB40 MICALCL ENSG00000254680 MICAL2 GC11P012216 GC11M012237
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254680 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254680 Gene

Genomic Locations for ENSG00000254680 Gene
chr11:12,261,426-12,263,173
(GRCh38/hg38)
Size:
1,748 bases
Orientation:
Minus strand
chr11:12,282,973-12,284,720
(GRCh37/hg19)
Size:
1,748 bases
Orientation:
Minus strand

Genomic View for ENSG00000254680 Gene

Genes around ENSG00000254680 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254680 Gene

Proteins for ENSG00000254680 Gene

Post-translational modifications for ENSG00000254680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254680 Gene

Domains & Families for ENSG00000254680 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000254680 Gene

Function for ENSG00000254680 Gene

Phenotypes From GWAS Catalog for ENSG00000254680 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254680 Gene

Localization for ENSG00000254680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254680 Gene

Pathways & Interactions for ENSG00000254680 Gene

PathCards logo

SuperPathways for ENSG00000254680 Gene

No Data Available

Interacting Proteins for ENSG00000254680 Gene

Gene Ontology (GO) - Biological Process for ENSG00000254680 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000254680 Gene

Drugs & Compounds for ENSG00000254680 Gene

No Compound Related Data Available

Transcripts for ENSG00000254680 Gene

mRNA/cDNA for ENSG00000254680 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254680 Gene

No ASD Table

Relevant External Links for ENSG00000254680 Gene

GeneLoc Exon Structure for
ENSG00000254680

Expression for ENSG00000254680 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000254680 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254680 Gene

This gene is overexpressed in Artery - Aorta (x6.8) and Artery - Coronary (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000254680: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254680 Gene

Orthologs for ENSG00000254680 Gene

Evolution for ENSG00000254680 Gene

ENSEMBL:
Gene Tree for ENSG00000254680 (if available)
TreeFam:
Gene Tree for ENSG00000254680 (if available)

No data available for Orthologs for ENSG00000254680 Gene

Paralogs for ENSG00000254680 Gene

No data available for Paralogs for ENSG00000254680 Gene

Variants for ENSG00000254680 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254680 Gene

Disorders for ENSG00000254680 Gene

No disorders were found for ENSG00000254680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254680 Gene

Publications for ENSG00000254680 Gene

No publications were found for ENSG00000254680 Gene.

No data available for External Links for ENSG00000254680 Gene

Products for ENSG00000254680 Gene

Sources for ENSG00000254680 Gene

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