Aliases for ENSG00000254651 Gene

Subcategory (RNA class) for ENSG00000254651 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000254651 Gene

  • Novel Transcript 5
  • NONHSAG008167.2 91
  • HSALNG0083926 164
  • Lnc-PRDM11-5 165
  • AC018716.1 5

External Ids for ENSG00000254651 Gene

Summaries for ENSG00000254651 Gene

GeneCards Summary for ENSG00000254651 Gene

ENSG00000254651 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254651 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254651 Gene

Genomics for ENSG00000254651 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254651 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J045400 Enhancer 0.5 Ensembl ENCODE 608.1 +1.4 1353 1.6 BHLHE40 JUND ENSG00000254651 SYT13 ENSG00000286418 ENSG00000255041 CHST1
GH11J045410 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 9.8 +12.3 12323 4.5 ZIC2 NFE2 ZFHX2 POLR2A RCOR1 JUND ZNF664 SMARCA4 RFX5 CHD2 ENSG00000286418 ENSG00000255091 CHST1 ENSG00000254651 SYT13 ENSG00000255041
GH11J045390 Enhancer 0.6 Ensembl 10 -8.5 -8548 0.2 RXRB SCRT2 ZBTB20 YY1 JUND ZFHX2 FOSL2 THRB MAX REST CHST1 ENSG00000254651 LINC02687 SYT13 ENSG00000255041
GH11J045385 Enhancer 1 FANTOM5 Ensembl ENCODE 5 -15.2 -15248 4 POLR2A TOE1 RAD21 RFX1 RAD51 SPI1 GABPA REST ATF2 MYC LINC02696 ENSG00000255091 CHST1 SYT13 ENSG00000254651 CRY2 LINC02687
GH11J045392 Enhancer 0.4 Ensembl 9.7 -6.6 -6647 1.2 ZIC2 ZFHX2 EGR2 RXRA CHST1 ENSG00000254651 LINC02687 SYT13 ENSG00000255041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254651 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254651 Gene

Genomic Locations for ENSG00000254651 Gene
chr11:45,399,448-45,400,529
(GRCh38/hg38)
Size:
1,082 bases
Orientation:
Plus strand
chr11:45,420,998-45,422,078
(GRCh37/hg19)
Size:
1,081 bases
Orientation:
Plus strand

Genomic View for ENSG00000254651 Gene

Genes around ENSG00000254651 on UCSC Golden Path with GeneCards custom track
ENSG00000254651 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254651 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254651 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254651 Gene

Proteins for ENSG00000254651 Gene

Post-translational modifications for ENSG00000254651 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254651 Gene

Domains & Families for ENSG00000254651 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254651 Gene

Function for ENSG00000254651 Gene

Phenotypes From GWAS Catalog for ENSG00000254651 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254651 Gene

Localization for ENSG00000254651 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254651 Gene

Pathways & Interactions for ENSG00000254651 Gene

PathCards logo

SuperPathways for ENSG00000254651 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254651 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254651 Gene

Drugs & Compounds for ENSG00000254651 Gene

No Compound Related Data Available

Transcripts for ENSG00000254651 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254651 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000568E09_9606 lncRNA 561 4

Ensembl: ENST00000534604 (view in UCSC) ,

LncBook: HSALNT0174783,

LNCipedia: lnc-PRDM11-5:1,

NONCODE: NONHSAT019027.2,

URS00009BAE1F_9606 lncRNA 561 2

LncBook: HSALNT0174784,

NONCODE: NONHSAT159089.1,

ENSG00000254651 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254651 Gene

No ASD Table

Relevant External Links for ENSG00000254651 Gene

GeneLoc Exon Structure for
ENSG00000254651

No data available for mRNA/cDNA for ENSG00000254651 Gene

Expression for ENSG00000254651 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254651 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254651 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x17.8), Brain - Cerebellum (x16.3), Brain - Frontal Cortex (BA9) (x5.0), and Brain - Cortex (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000254651: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254651 Gene

Orthologs for ENSG00000254651 Gene

Evolution for ENSG00000254651 Gene

ENSEMBL:
Gene Tree for ENSG00000254651 (if available)
TreeFam:
Gene Tree for ENSG00000254651 (if available)

No data available for Orthologs for ENSG00000254651 Gene

Paralogs for ENSG00000254651 Gene

No data available for Paralogs for ENSG00000254651 Gene

Variants for ENSG00000254651 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254651 Gene

Disorders for ENSG00000254651 Gene

Additional Disease Information for ENSG00000254651

No disorders were found for ENSG00000254651 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000254651 Gene

Publications for ENSG00000254651 Gene

No publications were found for ENSG00000254651 Gene.

No data available for Mastermind for ENSG00000254651 Gene

Products for ENSG00000254651 Gene

Sources for ENSG00000254651 Gene