Aliases for ENSG00000254638 Gene

Data sources for ENSG00000254638 Gene:

Subcategory (RNA class) for ENSG00000254638 Gene

lncRNA

Aliases for ENSG00000254638 Gene

External Ids for ENSG00000254638 Gene

Previous GeneCards Identifiers for ENSG00000254638 Gene

  • GC11M112035

Summaries for ENSG00000254638 Gene

GeneCards Summary for ENSG00000254638 Gene

ENSG00000254638 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254638 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254638 Gene

Genomics for ENSG00000254638 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254638 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112172 Enhancer 0.7 Ensembl 250.7 -0.2 -194 1.6 BCL11A CEBPB IRF4 CBFB BHLHE40 BATF HNF4A STAT5A NFATC1 TCF7 ENSG00000254638 BCO2 TEX12 ENSG00000255292
GH11J112073 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.6 +98.2 98162 2.7 TBP SP1 MXD4 SIX5 NR2C1 MNT IKZF1 SMAD5 ZNF217 POLR2A NKAPD1 PIH1D2 lnc-TIMM8B-1 ALG9 PPP2R1B ENSG00000254638 BCO2 SDHD SIK2 piR-54705
GH11J112195 Enhancer 0.8 Ensembl ENCODE 11.5 -23.2 -23157 2.1 BRCA1 CEBPB MAFF EP300 RAD21 RFX5 STAT3 TBP ZNF316 SPI1 HSALNG0087176 piR-42491-035 BCO2 ENSG00000254638 ENSG00000255292 TEX12 SDHD TIMM8B RNU6-44P HSALNG0087177
GH11J112128 Enhancer 0.8 Ensembl ENCODE 11.1 +43.2 43204 2.8 CEBPB FOSL1 JUND SPI1 ZBTB48 SP7 NFIB KLF1 FOS PRDM10 HSALNG0087171 BCO2 IL18 TEX12 ENSG00000255292 ENSG00000254638 SDHD TIMM8B NKAPD1 PIH1D2
GH11J112131 Enhancer 0.5 Ensembl ENCODE 10.9 +40.0 39995 2.8 JUND SCRT1 HSALNG0087170 BCO2 IL18 TEX12 ENSG00000255292 ENSG00000254638 HSALNG0087171 MK280144-093
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254638 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254638 Gene

Latest Assembly
chr11:112,165,153-112,172,607
(GRCh38/hg38)
Size:
7,455 bases
Orientation:
Minus strand

Previous Assembly
chr11:112,035,920-112,043,329
(GRCh37/hg19 by Ensembl)
Size:
7,410 bases
Orientation:
Minus strand

Genomic View for ENSG00000254638 Gene

Genes around ENSG00000254638 on UCSC Golden Path with GeneCards custom track
ENSG00000254638 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254638 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254638 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254638 Gene

Proteins for ENSG00000254638 Gene

Post-translational modifications for ENSG00000254638 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254638 Gene

Domains & Families for ENSG00000254638 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254638 Gene

Function for ENSG00000254638 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254638 Gene

Localization for ENSG00000254638 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254638 Gene

Pathways & Interactions for ENSG00000254638 Gene

PathCards logo

SuperPathways for ENSG00000254638 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254638 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254638 Gene

Drugs & Compounds for ENSG00000254638 Gene

No Compound Related Data Available

Transcripts for ENSG00000254638 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254638 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003CF078_9606 lncRNA 594 4

Ensembl: ENST00000527589 (view in UCSC) ,

LncBook: HSALNT0181131,

LNCipedia: lnc-IL18-1:1,

NONCODE: NONHSAT024185.2,

URS00009B54EB_9606 lncRNA 594 2

LncBook: HSALNT0181132,

NONCODE: NONHSAT160731.1,

URS00009C5C80_9606 lncRNA 647 1

NONCODE: NONHSAT160732.1,

URS0001BE1BBE_9606 lncRNA 594 1

LncBook: HSALNT0181132,

URS0001BED9B5_9606 lncRNA 594 1

LncBook: HSALNT0181131,

ENSG00000254638 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254638 Gene

No ASD Table

Relevant External Links for ENSG00000254638 Gene

GeneLoc Exon Structure for
ENSG00000254638

No data available for mRNA/cDNA for ENSG00000254638 Gene

Expression for ENSG00000254638 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254638 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254638 Gene

This gene is overexpressed in Testis (x11.7).
genes like me logo Genes that share expression patterns with ENSG00000254638: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254638 Gene

Orthologs for ENSG00000254638 Gene

Evolution for ENSG00000254638 Gene

ENSEMBL:
Gene Tree for ENSG00000254638 (if available)
TreeFam:
Gene Tree for ENSG00000254638 (if available)

No data available for Orthologs for ENSG00000254638 Gene

Paralogs for ENSG00000254638 Gene

No data available for Paralogs for ENSG00000254638 Gene

Variants for ENSG00000254638 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254638 Gene

Disorders for ENSG00000254638 Gene

No disorders were found for ENSG00000254638 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254638 Gene

Publications for ENSG00000254638 Gene

No publications were found for ENSG00000254638 Gene.

No data available for Mastermind for ENSG00000254638 Gene

Products for ENSG00000254638 Gene

Sources for ENSG00000254638 Gene