Aliases for ENSG00000254577 Gene

Subcategory (RNA class) for ENSG00000254577 Gene

lncRNA

Aliases for ENSG00000254577 Gene

  • Novel Transcript, Sense Overlapping TTC17 5
  • AC087276.2 5

External Ids for ENSG00000254577 Gene

Summaries for ENSG00000254577 Gene

GeneCards Summary for ENSG00000254577 Gene

ENSG00000254577 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254577 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254577 Gene

Genomics for ENSG00000254577 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254577 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J043366 Enhancer 0.9 Ensembl ENCODE 11.3 -22.3 -22346 3.3 JUND DPF2 RELB NFE2 FOXK2 ZNF316 FOS NCOR1 FOSL1 ZNF623 ENSG00000254577 API5 ENSG00000254907 TTC17 HSD17B12
GH11J043394 Enhancer 0.8 ENCODE 0.7 +3.9 3893 0.1 IKZF1 JUND ZNF24 DPF2 HDAC1 SOX6 FOXJ2 EP300 THRA HDAC2 TTC17 ENSG00000254577 RF00100-023 RN7SKP287 lnc-ALX4-15 HSD17B12
GH11J043393 Enhancer 0.7 Ensembl 0.7 +3.6 3618 0.2 IKZF1 JUND ZNF24 DPF2 SOX6 FOXJ2 EP300 THRA HDAC2 NR2C2 TTC17 ENSG00000254577 RF00100-023 RN7SKP287 lnc-ALX4-15 HSD17B12
GH11J043409 Enhancer 0.8 Ensembl ENCODE 0.4 +20.3 20322 1.8 SOX13 SP1 CTBP1 FOXA2 ESRRA ZNF217 NR2F2 FOSL2 FOXA1 HNF4A TTC17 API5 ENSG00000254577 lnc-ALX4-15 RF00100-023 RN7SKP287 HSD17B12
GH11J043405 Enhancer 0.6 Ensembl 0.4 +14.5 14518 2 POLR2A NFE2 CREB1 MAFG CEBPG ATF2 YY1 NFE2L2 SPI1 MAFK API5 ENSG00000254577 lnc-ALX4-15 RF00100-023 RN7SKP287 TTC17 HSD17B12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254577 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254577 Gene

Genomic Locations for ENSG00000254577 Gene
chr11:43,390,283-43,395,495
(GRCh38/hg38)
Size:
5,213 bases
Orientation:
Plus strand
chr11:43,411,833-43,417,045
(GRCh37/hg19)
Size:
5,213 bases
Orientation:
Plus strand

Genomic View for ENSG00000254577 Gene

Genes around ENSG00000254577 on UCSC Golden Path with GeneCards custom track
ENSG00000254577 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254577 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254577 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254577 Gene

Proteins for ENSG00000254577 Gene

Post-translational modifications for ENSG00000254577 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254577 Gene

Domains & Families for ENSG00000254577 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254577 Gene

Function for ENSG00000254577 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254577 Gene

Localization for ENSG00000254577 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254577 Gene

Pathways & Interactions for ENSG00000254577 Gene

PathCards logo

SuperPathways for ENSG00000254577 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254577 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254577 Gene

Drugs & Compounds for ENSG00000254577 Gene

No Compound Related Data Available

Transcripts for ENSG00000254577 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254577 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CA1AC_9606 lncRNA 183 1

Ensembl: ENST00000394183 (view in UCSC) ,

ENSG00000254577 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254577 Gene

No ASD Table

Relevant External Links for ENSG00000254577 Gene

GeneLoc Exon Structure for
ENSG00000254577

No data available for mRNA/cDNA for ENSG00000254577 Gene

Expression for ENSG00000254577 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254577 Gene

genes like me logo Genes that share expression patterns with ENSG00000254577: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254577 Gene

Orthologs for ENSG00000254577 Gene

Evolution for ENSG00000254577 Gene

ENSEMBL:
Gene Tree for ENSG00000254577 (if available)
TreeFam:
Gene Tree for ENSG00000254577 (if available)

No data available for Orthologs for ENSG00000254577 Gene

Paralogs for ENSG00000254577 Gene

No data available for Paralogs for ENSG00000254577 Gene

Variants for ENSG00000254577 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254577 Gene

Disorders for ENSG00000254577 Gene

No disorders were found for ENSG00000254577 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254577 Gene

Publications for ENSG00000254577 Gene

No publications were found for ENSG00000254577 Gene.

No data available for Mastermind for ENSG00000254577 Gene

Products for ENSG00000254577 Gene

Sources for ENSG00000254577 Gene