Aliases for ENSG00000254563 Gene

Subcategory (RNA class) for ENSG00000254563 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000254563 Gene

  • Novel Transcript 5
  • HSALNG0085988 167
  • NONHSAG009189 92
  • Lnc-USP35-5 168
  • AP002768.1 5

External Ids for ENSG00000254563 Gene

Previous GeneCards Identifiers for ENSG00000254563 Gene

  • GC11P078460

Summaries for ENSG00000254563 Gene

GeneCards Summary for ENSG00000254563 Gene

ENSG00000254563 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254563 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254563 Gene

Genomics for ENSG00000254563 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254563 Gene

Promoters and enhancers for ENSG00000254563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J078795 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 +57.4 57350 22 EP300 CTCF USF1 TEAD4 FOS ZIC2 TRIM28 REST MYC RAD21 ENSG00000254563 KCTD21 RSF1 GAB2 piR-38051-060 TENM4
GH11J078715 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.5 -33.4 -33387 2.5 ZNF217 CTCF JUND TEAD4 ZNF639 ZNF10 REST RAD21 CTBP1 TRIM22 ENSG00000254563 FTH1P16 MG828668-022 TENM4
GH11J078783 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 +35.7 35674 3.4 FOS FOXA1 JUND REST CEBPB ENSG00000254563 piR-38051-060 TENM4
GH11J078645 Enhancer 0.8 Ensembl ENCODE 10.4 -103.5 -103535 1.1 CTCF REST RAD21 TRIM22 SMC3 DEK ZBTB17 IRF1 IRF2 ELF1 ENSG00000254563 piR-48813-004 piR-52680-056
GH11J078646 Enhancer 0.7 ENCODE 10.4 -102.5 -102497 0.1 CTCF TRIM22 SMC3 MXI1 CEBPB PBX2 GATA3 PKNOX1 ZNF654 RAD21 ENSG00000254563 piR-48813-004 piR-52680-056
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254563 Gene

Genomic Locations for ENSG00000254563 Gene
chr11:78,749,250-78,756,480
(GRCh38/hg38)
Size:
7,231 bases
Orientation:
Plus strand
chr11:78,460,295-78,467,525
(GRCh37/hg19)
Size:
7,231 bases
Orientation:
Plus strand

Genomic View for ENSG00000254563 Gene

Genes around ENSG00000254563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254563 Gene

Proteins for ENSG00000254563 Gene

Post-translational modifications for ENSG00000254563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254563 Gene

Domains & Families for ENSG00000254563 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254563 Gene

Function for ENSG00000254563 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254563 Gene

Localization for ENSG00000254563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254563 Gene

Pathways & Interactions for ENSG00000254563 Gene

PathCards logo

SuperPathways for ENSG00000254563 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000254563 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254563 Gene

Drugs & Compounds for ENSG00000254563 Gene

No Compound Related Data Available

Transcripts for ENSG00000254563 Gene

mRNA/cDNA for ENSG00000254563 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254563 Gene

No ASD Table

Relevant External Links for ENSG00000254563 Gene

GeneLoc Exon Structure for
ENSG00000254563

Expression for ENSG00000254563 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254563 Gene

genes like me logo Genes that share expression patterns with ENSG00000254563: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254563 Gene

Orthologs for ENSG00000254563 Gene

Evolution for ENSG00000254563 Gene

ENSEMBL:
Gene Tree for ENSG00000254563 (if available)
TreeFam:
Gene Tree for ENSG00000254563 (if available)

No data available for Orthologs for ENSG00000254563 Gene

Paralogs for ENSG00000254563 Gene

No data available for Paralogs for ENSG00000254563 Gene

Variants for ENSG00000254563 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254563 Gene

Disorders for ENSG00000254563 Gene

No disorders were found for ENSG00000254563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254563 Gene

Publications for ENSG00000254563 Gene

No publications were found for ENSG00000254563 Gene.

No data available for Mastermind for ENSG00000254563 Gene

Products for ENSG00000254563 Gene

Sources for ENSG00000254563 Gene