Aliases for ENSG00000254461 Gene

Data sources for ENSG00000254461 Gene:

RNA type for ENSG00000254461 Gene

lncRNA

Aliases for ENSG00000254461 Gene

External Ids for ENSG00000254461 Gene

Previous GeneCards Identifiers for ENSG00000254461 Gene

  • GC11M066027
  • GC11M066259

Summaries for ENSG00000254461 Gene

GeneCards Summary for ENSG00000254461 Gene

ENSG00000254461 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254461 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254461 Gene

Genomics for ENSG00000254461 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254461 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065470 Promoter/Enhancer 3.2 VISTA EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 81.6 +771.7 771689 40.1 LARP7 BCLAF1 SP1 ZNF207 NCOR1 ZNF600 MYC IKZF1 SSRP1 JUND MALAT1 HSALNG0084901 LINC02736 SF1 ZFPL1 POLA2 MUS81 PCNX3 SART1 ENSG00000254855
GH11J065414 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 74.6 +836.9 836854 20.4 LARP7 BCLAF1 SP1 ZNF654 ZNF207 NCOR1 MYC IKZF1 ZNF600 SSRP1 NEAT1 ENSG00000278050 ENSG00000278144 ENSG00000277599 LOC107984338 lnc-LTBP3-2-001 SF1 ZFPL1 MUS81 ENSG00000254855
GH11J065884 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 66.3 +367.4 367394 20.5 BCLAF1 SP1 ZNF207 NCOR1 MYC ZNF654 ZNF600 IKZF1 SIX5 SSRP1 FOSL1 FIBP DRAP1 HSALNG0084963 RBM14 KAT5 SNX32 RBM4 MUS81 ENSG00000254461
GH11J067116 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 68.8 -858.2 -858200 6.3 BCLAF1 ZNF207 ZNF654 IKZF1 ZNF580 ZNF223 POLR2A ZIC2 NFIC ZBTB10 KDM2A HSALNG0085109 HSALNG0085110 LOC107984341 NONHSAG008781.2 RBM14 ENSG00000254855 ENSG00000254461 RBM4 RCE1
GH11J065851 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 37.9 +404.3 404349 12.2 BCLAF1 SP1 ZNF207 NCOR1 MYC IKZF1 ZNF600 SIX5 SSRP1 ZNF580 MUS81 CFL1 HSALNG0084955 lnc-CFL1-2 piR-49993-002 RBM14 POLA2 SART1 SF3B2 RBM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254461 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254461 Gene

Latest Assembly
chr11:66,258,792-66,261,834
(GRCh38/hg38)
Size:
3,043 bases
Orientation:
Minus strand

Previous Assembly
chr11:66,027,038-66,029,305
(GRCh37/hg19 by Ensembl)
Size:
2,268 bases
Orientation:
Minus strand

Genomic View for ENSG00000254461 Gene

Genes around ENSG00000254461 on UCSC Golden Path with GeneCards custom track
ENSG00000254461 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254461 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254461 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254461 Gene

Proteins for ENSG00000254461 Gene

Post-translational modifications for ENSG00000254461 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254461 Gene

Domains & Families for ENSG00000254461 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254461 Gene

Function for ENSG00000254461 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254461 Gene

Localization for ENSG00000254461 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254461 Gene

Pathways & Interactions for ENSG00000254461 Gene

PathCards logo

SuperPathways for ENSG00000254461 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254461 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254461 Gene

Drugs & Compounds for ENSG00000254461 Gene

No Compound Related Data Available

Transcripts for ENSG00000254461 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254461 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000039792D_9606 lncRNA 542 3

Ensembl: ENST00000533576 (view in UCSC) ,

LNCipedia: lnc-YIF1A-5:1,

NONCODE: NONHSAT022271.2,

URS0001BCBBE3_9606 lncRNA 1102 1

LncBook: HSALNT0176996,

ENSG00000254461 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254461 Gene

No ASD Table

Relevant External Links for ENSG00000254461 Gene

GeneLoc Exon Structure for
ENSG00000254461

No data available for mRNA/cDNA for ENSG00000254461 Gene

Expression for ENSG00000254461 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254461 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254461 Gene

This gene is overexpressed in Testis (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000254461: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254461 Gene

Orthologs for ENSG00000254461 Gene

Evolution for ENSG00000254461 Gene

ENSEMBL:
Gene Tree for ENSG00000254461 (if available)
TreeFam:
Gene Tree for ENSG00000254461 (if available)

No data available for Orthologs for ENSG00000254461 Gene

Paralogs for ENSG00000254461 Gene

No data available for Paralogs for ENSG00000254461 Gene

Variants for ENSG00000254461 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254461 Gene

Disorders for ENSG00000254461 Gene

Additional Disease Information for ENSG00000254461

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000254461 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000254461 Gene

Publications for ENSG00000254461 Gene

No publications were found for ENSG00000254461 Gene.

No data available for Mastermind for ENSG00000254461 Gene

Products for ENSG00000254461 Gene

Sources for ENSG00000254461 Gene