Aliases for ENSG00000254404 Gene

Subcategory (RNA class) for ENSG00000254404 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000254404 Gene

  • Novel Transcript 5
  • Lnc-SCGB1D4-2 170
  • NONHSAG008507 94
  • HSALNG0084588 169
  • AP003306.1 5

External Ids for ENSG00000254404 Gene

Previous GeneCards Identifiers for ENSG00000254404 Gene

  • GC11M061980

Summaries for ENSG00000254404 Gene

GeneCards Summary for ENSG00000254404 Gene

ENSG00000254404 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254404 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254404 Gene

Genomics for ENSG00000254404 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254404 Gene

Promoters and enhancers for ENSG00000254404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062259 Enhancer 0.9 Ensembl 750.6 -0.2 -151 0.6 LCORL MLX RBPJ NR2F6 ATF1 CREB1 MIXL1 RERE ELF3 TFE3 ENSG00000254404 TTC9C DAGLA SCGB2A2
GH11J062241 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 0.4 +18.5 18484 0.9 MNT SP7 MYC ZNF548 FOSL2 GLIS2 CREB1 PKNOX1 ZIC2 ZBTB8A SCGB1D2 SCGB2A1 NXF1 SNHG1 SCGB2A2 GANAB CPSF7 EML3 TMEM138 MTA2
GH11J062264 Enhancer 0.4 Ensembl 0.6 -4.0 -3952 1.4 HLF JUN REST SCGB2A1 ENSG00000254404 HSALNG0084590 SCGB2A2
GH11J062267 Enhancer 0.3 Ensembl 0.4 -6.3 -6252 0.4 FOS JUND HSALNG0084590 SCGB2A2 ENSG00000254404
GH11J062266 Enhancer 0.2 Ensembl 0.4 -5.6 -5552 0.2 HSALNG0084590 SCGB2A2 ENSG00000254404
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254404 Gene

Genomic Locations for ENSG00000254404 Gene
chr11:62,213,427-62,260,549
(GRCh38/hg38)
Size:
47,123 bases
Orientation:
Minus strand
chr11:61,980,899-62,028,021
(GRCh37/hg19)
Size:
47,123 bases
Orientation:
Minus strand

Genomic View for ENSG00000254404 Gene

Genes around ENSG00000254404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254404 Gene

Proteins for ENSG00000254404 Gene

Post-translational modifications for ENSG00000254404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254404 Gene

Domains & Families for ENSG00000254404 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254404 Gene

Function for ENSG00000254404 Gene

Phenotypes From GWAS Catalog for ENSG00000254404 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254404 Gene

Localization for ENSG00000254404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254404 Gene

Pathways & Interactions for ENSG00000254404 Gene

PathCards logo

SuperPathways for ENSG00000254404 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000254404 Gene

Drugs & Compounds for ENSG00000254404 Gene

No Compound Related Data Available

Transcripts for ENSG00000254404 Gene

mRNA/cDNA for ENSG00000254404 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254404 Gene

No ASD Table

Relevant External Links for ENSG00000254404 Gene

GeneLoc Exon Structure for
ENSG00000254404

Expression for ENSG00000254404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000254404 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254404 Gene

This gene is overexpressed in Breast - Mammary Tissue (x19.1), Uterus (x15.2), Cervix - Endocervix (x8.3), and Testis (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000254404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254404 Gene

Orthologs for ENSG00000254404 Gene

Evolution for ENSG00000254404 Gene

ENSEMBL:
Gene Tree for ENSG00000254404 (if available)
TreeFam:
Gene Tree for ENSG00000254404 (if available)

No data available for Orthologs for ENSG00000254404 Gene

Paralogs for ENSG00000254404 Gene

No data available for Paralogs for ENSG00000254404 Gene

Variants for ENSG00000254404 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254404 Gene

Disorders for ENSG00000254404 Gene

No disorders were found for ENSG00000254404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254404 Gene

Publications for ENSG00000254404 Gene

No publications were found for ENSG00000254404 Gene.

No data available for External Links for ENSG00000254404 Gene

Products for ENSG00000254404 Gene

Sources for ENSG00000254404 Gene