Aliases for ENSG00000254239 Gene

Subcategory (RNA class) for ENSG00000254239 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000254239 Gene

  • Novel Transcript 5
  • Lnc-SLC25A48-1 168
  • NONHSAG041619 92
  • HSALNG0045061 167
  • AC002428.2 5

External Ids for ENSG00000254239 Gene

Previous GeneCards Identifiers for ENSG00000254239 Gene

  • GC05P135233

Summaries for ENSG00000254239 Gene

GeneCards Summary for ENSG00000254239 Gene

ENSG00000254239 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254239 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254239 Gene

Genomics for ENSG00000254239 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254239 Gene

Promoters and enhancers for ENSG00000254239 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135895 Promoter 0.5 EPDnew 500.7 -1.8 -1776 0.1 REST CTCF ENSG00000254239 HSALNG0045060 IL9
GH05J136051 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +158.3 158324 9 EP300 FOXK2 ZNF217 CTCF ZSCAN5C TCF12 POLR2G NCOR1 RBAK JUND LECT2 ENSG00000254239 IL9 SMAD5 SMIM32 HSALNG0045075 TGFBI
GH05J135992 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 +100.2 100181 10.4 EP300 TCF12 JUND FOS ZIC2 REST TRIM28 ATF2 MXI1 GATA3 TGFBI LECT2 SMAD5 ENSG00000254239 IL9 SMAD5-AS1 SLC25A48 HSALNG0045068 lnc-LECT2-2
GH05J135241 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 -653.2 -653236 7.6 TCF12 JUND FOS ZIC2 REST TRIM28 RFX1 TSC22D4 MYC EP300 ENSG00000254239 C5orf66-AS2 piR-56037-012 C5orf66
GH05J135929 Promoter/Enhancer 1.2 Ensembl ENCODE 11.5 +33.0 32963 1.2 ZSCAN5C POLR2G PHF8 ZIC2 ZBTB10 ZBTB26 ZBTB7A SKI ZNF341 POLR2A FBXL21P lnc-SLC25A48-4 LECT2 ENSG00000254239 IL9 C5orf66 lnc-IL9-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254239 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254239 Gene

Genomic Locations for ENSG00000254239 Gene
chr5:135,897,637-135,900,250
(GRCh38/hg38)
Size:
2,614 bases
Orientation:
Plus strand
chr5:135,233,326-135,235,939
(GRCh37/hg19)
Size:
2,614 bases
Orientation:
Plus strand

Genomic View for ENSG00000254239 Gene

Genes around ENSG00000254239 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254239 Gene

Proteins for ENSG00000254239 Gene

Post-translational modifications for ENSG00000254239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254239 Gene

Domains & Families for ENSG00000254239 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254239 Gene

Function for ENSG00000254239 Gene

Phenotypes From GWAS Catalog for ENSG00000254239 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254239 Gene

Localization for ENSG00000254239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254239 Gene

Pathways & Interactions for ENSG00000254239 Gene

PathCards logo

SuperPathways for ENSG00000254239 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000254239 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254239 Gene

Drugs & Compounds for ENSG00000254239 Gene

No Compound Related Data Available

Transcripts for ENSG00000254239 Gene

mRNA/cDNA for ENSG00000254239 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254239 Gene

No ASD Table

Relevant External Links for ENSG00000254239 Gene

GeneLoc Exon Structure for
ENSG00000254239

Expression for ENSG00000254239 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254239 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254239 Gene

This gene is overexpressed in Nerve - Tibial (x14.2), Brain - Hippocampus (x5.7), and Brain - Amygdala (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000254239: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254239 Gene

Orthologs for ENSG00000254239 Gene

Evolution for ENSG00000254239 Gene

ENSEMBL:
Gene Tree for ENSG00000254239 (if available)
TreeFam:
Gene Tree for ENSG00000254239 (if available)

No data available for Orthologs for ENSG00000254239 Gene

Paralogs for ENSG00000254239 Gene

No data available for Paralogs for ENSG00000254239 Gene

Variants for ENSG00000254239 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254239 Gene

Disorders for ENSG00000254239 Gene

No disorders were found for ENSG00000254239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254239 Gene

Publications for ENSG00000254239 Gene

No publications were found for ENSG00000254239 Gene.

No data available for Mastermind for ENSG00000254239 Gene

Products for ENSG00000254239 Gene

Sources for ENSG00000254239 Gene