Aliases for ENSG00000254054 Gene

Subcategory (RNA class) for ENSG00000254054 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000254054 Gene

  • Novel Transcript 5
  • HSALNG0063689 169
  • NONHSAG049647 94
  • AC087273.2 5
  • Lnc-PCM1-1 170

External Ids for ENSG00000254054 Gene

Previous GeneCards Identifiers for ENSG00000254054 Gene

  • GC08P017763

Summaries for ENSG00000254054 Gene

GeneCards Summary for ENSG00000254054 Gene

ENSG00000254054 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254054 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254054 Gene

Genomics for ENSG00000254054 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000254054 Gene

Promoters and enhancers for ENSG00000254054 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J017898 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 758.7 -2.0 -1983 1.4 SIX5 L3MBTL2 ZSCAN21 IKZF1 ZXDB EHMT2 ZBTB17 GABPA YY1 HCFC1 ENSG00000254054 LOC101930275 PCM1 FGL1 ASAH1 MTUS1 lnc-MTUS1-3 RF00017-6860
GH08J017904 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 9.3 +6.3 6280 4.2 ZBTB40 CTCF MLX RBPJ USF2 NR2F6 ATF1 CREB1 MIXL1 NFYC LOC101930275 ENSG00000253215 ASAH1 ENSG00000254054 MTUS1 FGL1 RF00017-6860
GH08J017607 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 4.8 -290.4 -290445 4.8 RBPJ ZNF362 ZNF121 ELF3 MAFK CBFA2T2 SP7 ZSCAN21 PRDM1 PPARG ENSG00000287303 MTUS1 MTMR7 PDGFRL ENSG00000254054 ENSG00000277466
GH08J017902 Enhancer 0.6 ENCODE 9.4 +2.7 2663 0.2 MAX SP1 FOXA2 MBD1 JUND YY1 POLR2A HNF4A IKZF5 THAP11 ENSG00000253215 ENSG00000254054 FGL1 RF00017-6860
GH08J017895 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.6 -4.3 -4316 1.9 FOXA1 MLX RBPJ NR2F6 ATF1 CREB1 MIXL1 NFYC HLF ZNF652 FGL1 lnc-MTUS1-3 LOC101930275 MTUS1 ASAH1 ENSG00000254054 RF00017-6860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254054 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000254054 Gene

Genomic Locations for ENSG00000254054 Gene
chr8:17,900,484-17,908,011
(GRCh38/hg38)
Size:
7,528 bases
Orientation:
Plus strand
chr8:17,763,265-17,765,396
(GRCh37/hg19)
Size:
2,132 bases
Orientation:
Plus strand

Genomic View for ENSG00000254054 Gene

Genes around ENSG00000254054 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000254054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254054 Gene

Proteins for ENSG00000254054 Gene

Post-translational modifications for ENSG00000254054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254054 Gene

Domains & Families for ENSG00000254054 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254054 Gene

Function for ENSG00000254054 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254054 Gene

Localization for ENSG00000254054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254054 Gene

Pathways & Interactions for ENSG00000254054 Gene

PathCards logo

SuperPathways for ENSG00000254054 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254054 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000254054 Gene

Drugs & Compounds for ENSG00000254054 Gene

No Compound Related Data Available

Transcripts for ENSG00000254054 Gene

mRNA/cDNA for ENSG00000254054 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(2) LNCipedia transcripts :
(4) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254054 Gene

No ASD Table

Relevant External Links for ENSG00000254054 Gene

GeneLoc Exon Structure for
ENSG00000254054

Expression for ENSG00000254054 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000254054 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254054 Gene

This gene is overexpressed in Testis (x7.9) and Brain - Spinal cord (cervical c-1) (x5.3).
genes like me logo Genes that share expression patterns with ENSG00000254054: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254054 Gene

Orthologs for ENSG00000254054 Gene

Evolution for ENSG00000254054 Gene

ENSEMBL:
Gene Tree for ENSG00000254054 (if available)
TreeFam:
Gene Tree for ENSG00000254054 (if available)

No data available for Orthologs for ENSG00000254054 Gene

Paralogs for ENSG00000254054 Gene

No data available for Paralogs for ENSG00000254054 Gene

Variants for ENSG00000254054 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254054 Gene

Disorders for ENSG00000254054 Gene

No disorders were found for ENSG00000254054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254054 Gene

Publications for ENSG00000254054 Gene

No publications were found for ENSG00000254054 Gene.

No data available for External Links for ENSG00000254054 Gene

Products for ENSG00000254054 Gene

Sources for ENSG00000254054 Gene