Aliases for ENSG00000254054 Gene

Data sources for ENSG00000254054 Gene:

Subcategory (RNA class) for ENSG00000254054 Gene

lncRNA

Aliases for ENSG00000254054 Gene

External Ids for ENSG00000254054 Gene

Previous GeneCards Identifiers for ENSG00000254054 Gene

  • GC08P017763

Summaries for ENSG00000254054 Gene

GeneCards Summary for ENSG00000254054 Gene

ENSG00000254054 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254054 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254054 Gene

Genomics for ENSG00000254054 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254054 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J017904 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 9.3 +6.3 6289 4.2 CEBPA FOXA1 ZFP64 CTCF ZIC2 HOMEZ KDM6A THAP11 FOXA2 ZNF511 LOC101930275 CNOT7 ENSG00000253215 ASAH1 ENSG00000254054 MTUS1 FGL1 RF00017-6860
GH08J017607 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 4.8 -290.4 -290436 4.8 FEZF1 CEBPA ZEB1 FOXA2 ZNF639 SMAD4 SAP130 ZNF341 MIER3 EBF1 ENSG00000287303 MTUS1 MTMR7 PDGFRL ENSG00000254054 LOC107986919 ENSG00000277466
GH08J017902 Enhancer 0.6 ENCODE 9.4 +2.7 2672 0.2 THAP11 RXRA FOXA2 RBM22 MBD1 SOX5 JUND MAX HNF4A SP1 ENSG00000253215 ENSG00000254054 FGL1 MTUS1 RF00017-6860
GH08J017876 Enhancer 0.3 ENCODE 5 -23.4 -23443 1.5 RBFOX2 ENSG00000253215 LOC101930275 FGL1 MTUS1 ENSG00000254054 ASAH1 piR-37299 lnc-MTUS1-3 RF00017-6860
GH08J017895 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.7 -4.3 -4307 1.9 CEBPA FOXA1 KDM6A THAP11 CEBPB FOXA2 ZNF511 SMAD4 SAP130 EP300 FGL1 lnc-MTUS1-3 LOC101930275 MTUS1 ASAH1 ENSG00000254054 RF00017-6860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254054 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254054 Gene

Latest Assembly
chr8:17,900,475-17,916,411
(GRCh38/hg38)
Size:
15,937 bases
Orientation:
Plus strand

Previous Assembly
chr8:17,763,265-17,765,396
(GRCh37/hg19 by Ensembl)
Size:
2,132 bases
Orientation:
Plus strand

Genomic View for ENSG00000254054 Gene

Genes around ENSG00000254054 on UCSC Golden Path with GeneCards custom track
ENSG00000254054 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254054 Gene

Proteins for ENSG00000254054 Gene

Post-translational modifications for ENSG00000254054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254054 Gene

Domains & Families for ENSG00000254054 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254054 Gene

Function for ENSG00000254054 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254054 Gene

Localization for ENSG00000254054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254054 Gene

Pathways & Interactions for ENSG00000254054 Gene

PathCards logo

SuperPathways for ENSG00000254054 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254054 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254054 Gene

Drugs & Compounds for ENSG00000254054 Gene

No Compound Related Data Available

Transcripts for ENSG00000254054 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254054 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEBECF_9606 lncRNA 1317 1

Ensembl: ENST00000519038 (view in UCSC) ,

URS0000EEFD39_9606 lncRNA 809 1

Ensembl: ENST00000667767 (view in UCSC) ,

URS00008B302D_9606 lncRNA 1152 3

LncBook: HSALNT0133603,

LNCipedia: lnc-PCM1-1:1,

NONCODE: NONHSAT125306.2,

URS00009BFA0D_9606 lncRNA 1280 2

LncBook: HSALNT0133596,

NONCODE: NONHSAT215474.1,

URS00000A0842_9606 lncRNA 634 2

LncBook: HSALNT0133604,

LNCipedia: lnc-PCM1-1:2,

ENSG00000254054 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254054 Gene

No ASD Table

Relevant External Links for ENSG00000254054 Gene

GeneLoc Exon Structure for
ENSG00000254054

No data available for mRNA/cDNA for ENSG00000254054 Gene

Expression for ENSG00000254054 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254054 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254054 Gene

This gene is overexpressed in Testis (x7.9) and Brain - Spinal cord (cervical c-1) (x5.3).
genes like me logo Genes that share expression patterns with ENSG00000254054: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254054 Gene

Orthologs for ENSG00000254054 Gene

Evolution for ENSG00000254054 Gene

ENSEMBL:
Gene Tree for ENSG00000254054 (if available)
TreeFam:
Gene Tree for ENSG00000254054 (if available)

No data available for Orthologs for ENSG00000254054 Gene

Paralogs for ENSG00000254054 Gene

No data available for Paralogs for ENSG00000254054 Gene

Variants for ENSG00000254054 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254054 Gene

Disorders for ENSG00000254054 Gene

Additional Disease Information for ENSG00000254054

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000254054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000254054 Gene

Publications for ENSG00000254054 Gene

No publications were found for ENSG00000254054 Gene.

No data available for Mastermind for ENSG00000254054 Gene

Products for ENSG00000254054 Gene

Sources for ENSG00000254054 Gene