Aliases for ENSG00000254040 Gene

Subcategory (RNA class) for ENSG00000254040 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000254040 Gene

  • Novel Transcript 5
  • NONHSAG049690.2 91
  • Lnc-ATP6V1B2-6 165
  • HSALNG0063837 164
  • AC103719.1 5

External Ids for ENSG00000254040 Gene

Previous GeneCards Identifiers for ENSG00000254040 Gene

  • GC08P020880

Summaries for ENSG00000254040 Gene

GeneCards Summary for ENSG00000254040 Gene

ENSG00000254040 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000254040 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000254040 Gene

Genomics for ENSG00000254040 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000254040 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J021021 Enhancer 0.2 Ensembl 600.7 -1.2 -1175 0.2 ENSG00000254040 GFRA2 lnc-ATP6V1B2-10 lnc-GFRA2-6 ENSG00000254092 LZTS1
GH08J021033 Enhancer 0.6 Ensembl 0.4 +10.8 10825 0.2 JUND ZNF24 EGR1 FOSL1 ZFHX2 DPF2 ATF3 GLIS1 ZEB2 POLR3A XPO7 ENSG00000254040 piR-60031-058 lnc-ATP6V1B2-10 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
GH08J021040 Enhancer 0.7 ENCODE 0.4 +18.0 18029 0.2 CTCF ZIC2 PKNOX1 PATZ1 REST RAD21 ZNF341 SMC3 ZBTB17 MAZ piR-60031-058 ENSG00000254040 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
GH08J021037 Enhancer 0.4 ENCODE 0.4 +15.6 15551 3.1 POLR2A SIN3A CTCF piR-60031-058 ENSG00000254040 lnc-ATP6V1B2-10 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000254040 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000254040 Gene

Genomic Locations for ENSG00000254040 Gene
chr8:21,023,276-21,030,368
(GRCh38/hg38)
Size:
7,093 bases
Orientation:
Plus strand
chr8:20,880,807-20,886,569
(GRCh37/hg19)
Size:
5,763 bases
Orientation:
Plus strand

Genomic View for ENSG00000254040 Gene

Genes around ENSG00000254040 on UCSC Golden Path with GeneCards custom track
ENSG00000254040 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000254040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000254040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000254040 Gene

Proteins for ENSG00000254040 Gene

Post-translational modifications for ENSG00000254040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000254040 Gene

Domains & Families for ENSG00000254040 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000254040 Gene

Function for ENSG00000254040 Gene

Phenotypes From GWAS Catalog for ENSG00000254040 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000254040 Gene

Localization for ENSG00000254040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000254040 Gene

Pathways & Interactions for ENSG00000254040 Gene

PathCards logo

SuperPathways for ENSG00000254040 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000254040 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000254040 Gene

Drugs & Compounds for ENSG00000254040 Gene

No Compound Related Data Available

Transcripts for ENSG00000254040 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000254040 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A9D61_9606 lncRNA 581 4

Ensembl: ENST00000517994 (view in UCSC) ,

LncBook: HSALNT0133928,

LNCipedia: lnc-ATP6V1B2-6:1,

NONCODE: NONHSAT125423.2,

URS0000EF08A5_9606 lncRNA 1906 1

Ensembl: ENST00000663309 (view in UCSC) ,

URS00009AEE7D_9606 lncRNA 579 2

LncBook: HSALNT0133929,

NONCODE: NONHSAT215524.1,

URS00009B71FF_9606 lncRNA 607 1

NONCODE: NONHSAT215525.1,

ENSG00000254040 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000254040 Gene

No ASD Table

Relevant External Links for ENSG00000254040 Gene

GeneLoc Exon Structure for
ENSG00000254040

No data available for mRNA/cDNA for ENSG00000254040 Gene

Expression for ENSG00000254040 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000254040 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000254040 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x14.0), Brain - Substantia nigra (x7.6), Brain - Hippocampus (x6.6), Brain - Hypothalamus (x5.6), and Brain - Amygdala (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000254040: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000254040 Gene

Orthologs for ENSG00000254040 Gene

Evolution for ENSG00000254040 Gene

ENSEMBL:
Gene Tree for ENSG00000254040 (if available)
TreeFam:
Gene Tree for ENSG00000254040 (if available)

No data available for Orthologs for ENSG00000254040 Gene

Paralogs for ENSG00000254040 Gene

No data available for Paralogs for ENSG00000254040 Gene

Variants for ENSG00000254040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000254040 Gene

Disorders for ENSG00000254040 Gene

No disorders were found for ENSG00000254040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000254040 Gene

Publications for ENSG00000254040 Gene

No publications were found for ENSG00000254040 Gene.

No data available for Mastermind for ENSG00000254040 Gene

Products for ENSG00000254040 Gene

Sources for ENSG00000254040 Gene