Aliases for ENSG00000253961 Gene

Data sources for ENSG00000253961 Gene:

Subcategory (RNA class) for ENSG00000253961 Gene

lncRNA

Aliases for ENSG00000253961 Gene

External Ids for ENSG00000253961 Gene

Previous GeneCards Identifiers for ENSG00000253961 Gene

  • GC08M031024

Summaries for ENSG00000253961 Gene

GeneCards Summary for ENSG00000253961 Gene

ENSG00000253961 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253961 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253961 Gene

Genomics for ENSG00000253961 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000253961 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J030919 Enhancer 0.9 Ensembl ENCODE 11.3 +258.6 258560 1.6 CTCF REST IRF4 TRIM22 SMC3 RAD21 TEAD3 YY1 ADNP JUND PPP2CB ENSG00000253961 ENSG00000253204 HSALNG0064392 TEX15 lnc-TEX15-1 PURG RF00017-6939
GH08J030922 Enhancer 0.8 Ensembl 11.2 +253.1 253067 3 CEBPA ZNF623 FOXA2 ZEB2 ZNF433 PRDM10 SPI1 ZFP37 FOXK2 REST WRN GTF2E2 PPP2CB PURG RPS15AP24 ENSG00000253961 ENSG00000272375 ENSG00000253204 HSALNG0064392 HSALNG0064393
GH08J031131 Enhancer 0.4 Ensembl 11.1 +45.5 45467 0.2 FEZF1 ZFP37 ZBTB17 RF00876-025 SUMO2P16 lnc-PURG-3 ENSG00000253961 WRN NRG1
GH08J031172 Enhancer 0.3 Ensembl 0.7 +4.6 4567 0.4 MTA2 WRN PPP2CB ENSG00000253961 lnc-WRN-1 SUMO2P16 lnc-PURG-3 NRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253961 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000253961 Gene

Latest Assembly
chr8:31,162,276-31,177,168
(GRCh38/hg38)
Size:
14,893 bases
Orientation:
Minus strand

Previous Assembly
chr8:31,024,594-31,034,683
(GRCh37/hg19 by Ensembl)
Size:
10,090 bases
Orientation:
Minus strand

Genomic View for ENSG00000253961 Gene

Genes around ENSG00000253961 on UCSC Golden Path with GeneCards custom track
ENSG00000253961 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000253961 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253961 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253961 Gene

Proteins for ENSG00000253961 Gene

Post-translational modifications for ENSG00000253961 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253961 Gene

Domains & Families for ENSG00000253961 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253961 Gene

Function for ENSG00000253961 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253961 Gene

Localization for ENSG00000253961 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253961 Gene

Pathways & Interactions for ENSG00000253961 Gene

PathCards logo

SuperPathways for ENSG00000253961 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000253961 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253961 Gene

Drugs & Compounds for ENSG00000253961 Gene

No Compound Related Data Available

Transcripts for ENSG00000253961 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000253961 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000023921F_9606 lncRNA 647 4

Ensembl: ENST00000523365 (view in UCSC) ,

LncBook: HSALNT0134996,

LNCipedia: lnc-PURG-1:1,

NONCODE: NONHSAT125905.2,

URS0000344935_9606 lncRNA 296 4

Ensembl: ENST00000521252 (view in UCSC) ,

LncBook: HSALNT0134994,

LNCipedia: lnc-PURG-1:2,

NONCODE: NONHSAT125904.2,

URS00008B8120_9606 lncRNA 328 3

LncBook: HSALNT0134993,

LNCipedia: lnc-PURG-1:3,

NONCODE: NONHSAT125903.2,

URS00009BEEAA_9606 lncRNA 758 2

LncBook: HSALNT0134995,

NONCODE: NONHSAT216915.1,

URS00009C3F27_9606 lncRNA 1030 1

NONCODE: NONHSAT216914.1,

ENSG00000253961 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253961 Gene

No ASD Table

Relevant External Links for ENSG00000253961 Gene

GeneLoc Exon Structure for
ENSG00000253961

No data available for mRNA/cDNA for ENSG00000253961 Gene

Expression for ENSG00000253961 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253961 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253961 Gene

This gene is overexpressed in Testis (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000253961: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253961 Gene

Orthologs for ENSG00000253961 Gene

Evolution for ENSG00000253961 Gene

ENSEMBL:
Gene Tree for ENSG00000253961 (if available)
TreeFam:
Gene Tree for ENSG00000253961 (if available)

No data available for Orthologs for ENSG00000253961 Gene

Paralogs for ENSG00000253961 Gene

No data available for Paralogs for ENSG00000253961 Gene

Variants for ENSG00000253961 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253961 Gene

Disorders for ENSG00000253961 Gene

No disorders were found for ENSG00000253961 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000253961 Gene

Publications for ENSG00000253961 Gene

No publications were found for ENSG00000253961 Gene.

No data available for Mastermind for ENSG00000253961 Gene

Products for ENSG00000253961 Gene

Sources for ENSG00000253961 Gene