Aliases for ENSG00000253891 Gene

Subcategory (RNA class) for ENSG00000253891 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000253891 Gene

  • Novel Transcript 5
  • NONHSAG049776.2 91
  • HSALNG0064035 164
  • AC023202.1 5
  • Lnc-STC1-1 165

External Ids for ENSG00000253891 Gene

Previous GeneCards Identifiers for ENSG00000253891 Gene

  • GC08M024027

Summaries for ENSG00000253891 Gene

GeneCards Summary for ENSG00000253891 Gene

ENSG00000253891 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253891 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253891 Gene

Genomics for ENSG00000253891 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000253891 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J024228 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +4.3 4320 1.5 CTCF REST RAD21 TRIM22 SCRT2 SMC3 GTF2F1 MAX RFX5 STAT1 ADAMDEC1 ENSG00000253535 ENSG00000253891 HSALNG0064038 ADAM28 STC1
GH08J024216 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.3 15298 3.1 ZNF629 REST ZNF600 CEBPA CEBPB SP1 ATF3 ZEB1 FOS CHD2 STC1 HSALNG0064038 ENSG00000253891 ADAM28
GH08J024221 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +11.1 11117 1.8 CREB1 SCRT2 CTBP1 CEBPB ZNF585B CHD2 JUN ZBTB48 ESRRA ZNF217 ENSG00000253891 HSALNG0064038 ADAM28 STC1
GH08J024204 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +27.5 27450 4.4 CEBPB SP1 NFE2 NR3C1 CTCF ZNF316 JUN FOS ELK4 JUND HSALNG0064038 ENSG00000253891 ADAM28 LOC107986931 STC1
GH08J024191 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +40.7 40656 2.4 TEAD4 ZIC2 POLR2A NFE2 CEBPB YY1 RAD21 FOS JUND NANOG STC1 HSALNG0064038 piR-57135-089 ENSG00000253891 ADAM28 LOC107986931
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253891 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000253891 Gene

Genomic Locations for ENSG00000253891 Gene
chr8:24,165,934-24,233,640
(GRCh38/hg38)
Size:
67,707 bases
Orientation:
Minus strand
chr8:24,027,470-24,034,593
(GRCh37/hg19)
Size:
7,124 bases
Orientation:
Minus strand

Genomic View for ENSG00000253891 Gene

Genes around ENSG00000253891 on UCSC Golden Path with GeneCards custom track
ENSG00000253891 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000253891 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253891 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253891 Gene

Proteins for ENSG00000253891 Gene

Post-translational modifications for ENSG00000253891 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253891 Gene

Domains & Families for ENSG00000253891 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253891 Gene

Function for ENSG00000253891 Gene

Phenotypes From GWAS Catalog for ENSG00000253891 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253891 Gene

Localization for ENSG00000253891 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253891 Gene

Pathways & Interactions for ENSG00000253891 Gene

PathCards logo

SuperPathways for ENSG00000253891 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000253891 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253891 Gene

Drugs & Compounds for ENSG00000253891 Gene

No Compound Related Data Available

Transcripts for ENSG00000253891 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000253891 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEF3D6_9606 lncRNA 1447 1

Ensembl: ENST00000521681 (view in UCSC) ,

URS00000FA152_9606 lncRNA 491 3

LncBook: HSALNT0134273,

LNCipedia: lnc-STC1-1:1,

NONCODE: NONHSAT125595.2,

URS00009BF319_9606 lncRNA 491 2

LncBook: HSALNT0134274,

NONCODE: NONHSAT216858.1,

URS0000EBFFDD_9606 lncRNA 9438 1

LncBook: HSALNT0134271,

ENSG00000253891 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253891 Gene

No ASD Table

Relevant External Links for ENSG00000253891 Gene

GeneLoc Exon Structure for
ENSG00000253891

No data available for mRNA/cDNA for ENSG00000253891 Gene

Expression for ENSG00000253891 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253891 Gene

genes like me logo Genes that share expression patterns with ENSG00000253891: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253891 Gene

Orthologs for ENSG00000253891 Gene

Evolution for ENSG00000253891 Gene

ENSEMBL:
Gene Tree for ENSG00000253891 (if available)
TreeFam:
Gene Tree for ENSG00000253891 (if available)

No data available for Orthologs for ENSG00000253891 Gene

Paralogs for ENSG00000253891 Gene

No data available for Paralogs for ENSG00000253891 Gene

Variants for ENSG00000253891 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253891 Gene

Disorders for ENSG00000253891 Gene

Additional Disease Information for ENSG00000253891

No disorders were found for ENSG00000253891 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000253891 Gene

Publications for ENSG00000253891 Gene

No publications were found for ENSG00000253891 Gene.

No data available for Mastermind for ENSG00000253891 Gene

Products for ENSG00000253891 Gene

Sources for ENSG00000253891 Gene